o mltt.plot(, backward = FALSE) did not set the x-axis correctly.
o A bug was introduced in prop.clades() with ape 3.0. The help page
- has been clarified relative to the use of the 'rooted' option.
+ has been clarified relative to the use of the option 'rooted'.
o mantel.test() printed a useless warning message.
o njs(), bionjs(), and mvrs() now return an error if 'fs < 1'.
+ o SDM() did not work correctly. The code has also been generally
+ improved.
+
OTHER CHANGES
o The option 'original.data' of write.nexus() has been removed.
+ o The files bionjs.c, mvr.c, mvrs.c, njs.c, triangMtd.c, and
+ triangMtds.c have been improved which should fix some bugs in
+ the corresponding functions.
+
CHANGES IN APE VERSION 3.0-1