new files for ape 3.0

[ape.git] / NEWS

diff --git a/NEWS b/NEWS
index 55d0adc836df886582039bfc36a8f2d039694ada..0ca6a14ff076ca1681992b5e4fb3cd9aacfaadb2 100644 (file)
--- a/NEWS
+++ b/NEWS
@@ -3,8 +3,17 @@
 
 NEW FEATURES
 
+    o The three functions dyule, dbd, and dbdTime calculate the
+      density probability (i.e., the distribution of the number of
+      species) for the Yule, the constant and the time-dependent
+      birth-beath models, respectively. These probabilities can be
+      conditional on no extinction and/or on a log-scale.
+
     o plot.phylo() has a new option 'rotate.tree' to rotate unrooted,
-      fan or radial trees around the center of the plot.
+      fan, or radial trees around the center of the plot.
+
+    o boot.phylo() and prop.clades() have a new option rooted =
+      FALSE. Note that the behaviour of prop.part() is unchanged.
 
 
 BUG FIXES
@@ -15,7 +24,7 @@ BUG FIXES
     o extract.clade() sometimes shuffled some tip labels (thanks to
       Ludovic Mallet and Mahendra Mariadassou for the fix).
 
-    o clustal() should now by default find the executable under Windows.
+    o clustal() should now find by default the executable under Windows.
 
 
 OTHER CHANGES