new code for reading FASTA files

[ape.git] / NAMESPACE

diff --git a/NAMESPACE b/NAMESPACE
index 18ed656695aad2e6021e9dea95ced3255d94fc9e..6951d4220e1129fbdf6f8cf220e533cee2853e34 100644 (file)
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -1,12 +1,14 @@
 useDynLib(ape)
 
-export(as.DNAbin, as.phylo, base.freq, dist.dna, dist.nodes, drop.tip, ltt.plot, nj, rcoal, rtree, rmtree, read.dna, read.nexus, read.tree, vcv.phylo, write.dna, write.nexus, write.tree)
+exportPattern(".+")
 
 import(gee, nlme)
 importFrom(lattice, xyplot, panel.lines, panel.points)
+importFrom(stats, as.hclust, cophenetic, reorder)
 
 S3method(print, phylo)
 S3method(plot, phylo)
+S3method(cophenetic, phylo)
 S3method(as.hclust, phylo)
 S3method(reorder, phylo)
 S3method(print, multiPhylo)
@@ -19,5 +21,6 @@ S3method(print, DNAbin)
 S3method(cbind, DNAbin)
 S3method(rbind, DNAbin)
 S3method("[", DNAbin)
-S3method(summary, DNAbin)
+S3method(labels, DNAbin)
 S3method(as.character, DNAbin)
+S3method(as.matrix, DNAbin)