removing evolve.phylo + bug fix in as.phylo.hclust

[ape.git] / DESCRIPTION

diff --git a/DESCRIPTION b/DESCRIPTION
index 5ded9a58c3ebc937c910d1f5be588481cd8ea3df..f582fd4f4984eba2b1fe5f83744b470ae8a3354c 100644 (file)
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+++ b/DESCRIPTION
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 Package: ape
-Version: 2.2
-Date: 2008-04-24
+Version: 2.5-2
+Date: 2010-04-07
 Title: Analyses of Phylogenetics and Evolution
-Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
-  Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
-  Gangolf Jobb, Christoph Heibl, Vincent Lefort, Jim Lemon,
-  Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer,
-  Damien de Vienne
-Maintainer: Emmanuel Paradis <Emmanuel.Paradis@mpl.ird.fr>
+Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Gangolf Jobb, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer, Damien de Vienne
+Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
 Depends: R (>= 2.6.0)
-Suggests: gee, nlme, lattice
+Suggests: gee
+Imports: gee, nlme, lattice
 ZipData: no
 Description: ape provides functions for reading, writing, plotting,
   and manipulating phylogenetic trees, analyses of comparative data
   in a phylogenetic framework, analyses of diversification and
   macroevolution, computing distances from allelic and nucleotide
   data, reading nucleotide sequences, and several tools such as
-  Mantel's test, computation of minimum spanning tree, the population
-  parameter theta based on various approaches, nucleotide diversity,
-  generalized skyline plots, estimation of absolute evolutionary rates
-  and clock-like trees using mean path lengths, non-parametric rate
-  smoothing and penalized likelihood, classifying genes in trees using
-  the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
-  with the NJ, BIONJ, ME, and ML methods.
+  Mantel's test, computation of minimum spanning tree, generalized
+  skyline plots, estimation of absolute evolutionary rates and
+  clock-like trees using mean path lengths, non-parametric rate
+  smoothing and penalized likelihood. Phylogeny estimation can be
+  done with the NJ, BIONJ, and ME methods.
 License: GPL (>= 2)
 URL: http://ape.mpl.ird.fr/