various bug fixes since the release of ape 3.0

[ape.git] / DESCRIPTION

diff --git a/DESCRIPTION b/DESCRIPTION
index bcf5e6810b88860d6b5a6a47eae6f85aacf26608..8d34b1865ec83e2b59fe20a3445a82166bff2c67 100644 (file)
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -1,26 +1,8 @@
 Package: ape
-Version: 2.3
-Date: 2009-03-27
+Version: 3.0-1
+Date: 2012-02-17
 Title: Analyses of Phylogenetics and Evolution
-Author: Emmanuel Paradis,
-Ben Bolker,
-Julien Claude,
-Hoa Sien Cuong,
-Richard Desper,
-Benoit Durand,
-Julien Dutheil,
-Olivier Gascuel,
-Gangolf Jobb,
-Christoph Heibl,
-Daniel Lawson,
-Vincent Lefort,
-Pierre Legendre,
-Jim Lemon,
-Yvonnick Noel,
-Johan Nylander,
-Rainer Opgen-Rhein,
-Korbinian Strimmer,
-Damien de Vienne
+Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong, Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel, Christoph Heibl, Daniel Lawson, Vincent Lefort, Pierre Legendre, Jim Lemon, Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Andrei-Alin Popescu, Klaus Schliep, Korbinian Strimmer, Damien de Vienne
 Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
 Depends: R (>= 2.6.0)
 Suggests: gee
@@ -31,12 +13,12 @@ Description: ape provides functions for reading, writing, plotting,
   in a phylogenetic framework, analyses of diversification and
   macroevolution, computing distances from allelic and nucleotide
   data, reading nucleotide sequences, and several tools such as
-  Mantel's test, computation of minimum spanning tree, the population
-  parameter theta based on various approaches, nucleotide diversity,
-  generalized skyline plots, estimation of absolute evolutionary rates
-  and clock-like trees using mean path lengths, non-parametric rate
-  smoothing and penalized likelihood, classifying genes in trees using
-  the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
-  with the NJ, BIONJ, and ME methods.
+  Mantel's test, computation of minimum spanning tree, generalized
+  skyline plots, estimation of absolute evolutionary rates and
+  clock-like trees using mean path lengths, non-parametric rate
+  smoothing and penalized likelihood. Phylogeny estimation can be
+  done with the NJ, BIONJ, ME, MVR, SDM, and triangle methods, and
+  several methods handling incomplete distance matrices (NJ*, BIONJ*,
+  MVR*, and the corresponding triangle method).
 License: GPL (>= 2)
 URL: http://ape.mpl.ird.fr/