- CHANGES IN APE VERSION 2.5
+ CHANGES IN APE VERSION 2.5-1
+
+
+NEW FEATURES
+
+ o The new function stree generates trees with regular shapes.
+
+ o drop.tip(), extract.clade(), and root() now have an 'interactive'
+ option to make the operation on a plotted tree.
+
+
+BUG FIXES
+
+ o rTraitDisc() did not use its 'freq' argument correctly (it was
+ multiplied with the rate matrix column-wise instead of row-wise).
+
+ o [node|tip|edge]labels(thermo = ) used to draw empty thermometers
+ with NA values. Nothing is drawn now like with 'text' or 'pch'.
+ The same bug occurred with the 'pie' option.
+
+
+
+ CHANGES IN APE VERSION 2.5
NEW FEATURES
o The branch length score replaces the geodesic distance in dist.topo.
+ o Three new data sets are included: the gopher-lice data (gopher.D),
+ SO2 air pollution in 41 US cities (lmorigin.ex1, from Sokal &
+ Rohlf 1995), and some host-parasite specificity data
+ (lmorigin.ex2, from Legendre & Desdevises 2009).
+
BUG FIXES
to Otto Cordero for the fix).
+OTHER CHANGES
+
+ o The geodesic distance has been replaced by the branch length score
+ in dist.topo().
+
+
CHANGES IN APE VERSION 2.4-1