- CHANGES IN APE VERSION 2.6-4
+ CHANGES IN APE VERSION 2.7
NEW FEATURES
nucleotide sequence alignment by calling the external programs
of the same names.
+ o Four new functions, diversity.contrast.test, mcconwaysims.test,
+ richness.yule.test, and slowinskiguyer.test, implement various
+ tests of diversification shifts using sister-clade comparisons.
+
o base.freq() gains an option 'all' to count all the possible bases
including the ambiguous ones (defaults to FALSE).