bug fix in seg.sites + new option in base.freq

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 5028e760afe10da2418ce224643490dad9d12b39..b9e9e593c7a87c84907d54373e79ec8d8c867c26 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -1,3 +1,18 @@
+               CHANGES IN APE VERSION 2.3-4
+
+
+NEW FEATURES
+
+    o base.freq() has a new option 'freq' to return the counts; the
+      default is still to return the proportions.
+
+
+BUG FIXES
+
+    o seg.sites() did not handle ambiguous nucleotides correctly: they are
+      now ignored.
+
+
                CHANGES IN APE VERSION 2.3-3