a bunch of new stuff (see ChangeLog)

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index 32f99c176f5c57989b540425499eea13c3700a6b..a635615eecbe29422c094b6ce0daee4177b9e068 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -6,11 +6,19 @@ NEW FEATURES
     o There is a new image() method for "DNAbin" objects: it plots DNA
       alignments in a flexible and efficient way.
 
+    o Two new functions as.network.phylo and as.igraph.phylo convert
+      trees of class "phylo" into these respective network classes
+      defined in the packages of the same names.
+
+    o The three new functions clustal, muscle, and tcoffee perform
+      nucleotide sequence alignment by calling the external programs
+      of the same names.
+
     o base.freq() gains an option 'all' to count all the possible bases
       including the ambiguous ones (defaults to FALSE).
 
-    o read.nexus() now writes tree names in the NEXUS file if given a list
-      of trees with names.
+    o read.nexus() now writes tree names in the NEXUS file if given a
+      list of trees with names.
 
 
 BUG FIXES