fixing various bugs + news in cophyloplot

[ape.git] / ChangeLog

diff --git a/ChangeLog b/ChangeLog
index c551deda10ce5fdb401272ecfa8a214adc31d645..1088c13f58648f2cd2259838c48cb4f5d0d496d1 100644 (file)
--- a/ChangeLog
+++ b/ChangeLog
@@ -11,6 +11,9 @@ NEW FEATURES
     o drop.tip(), extract.clade(), root(), and bind.tree() now have an
       'interactive' option to make the operation on a plotted tree.
 
+    o cophyloplot() gains two new arguments 'lwd' and 'lty' for the
+      association links; they are recycled like 'col' (which wasn't before).
+
 
 BUG FIXES
 
@@ -29,6 +32,17 @@ BUG FIXES
     o plot.phylo(type = "p") sometimes failed to colour correctly the
       vertical lines representing the nodes.
 
+    o plot.phylo(direction = "l", x.lim = 30) failed to plot the branches
+      in the correct direction though the tip labels were displayed
+      correctly.
+
+
+OTHER CHANGES
+
+    o The c, cbind, and rbind methods for "DNAbin" objetcs now check that
+      the sequences are correctly stored (in a list for c, in a matrix
+      for the two other functions).
+
 
 
        CHANGES IN APE VERSION 2.5