git.donarmstrong.com Git - biopieces.git/tree

drwxr-xr-x		..
-rw-r--r--	88	00README	blob \| history \| raw
-rwxr-xr-x	2362	add_ident	blob \| history \| raw
-rwxr-xr-x	2589	align_pair_seq	blob \| history \| raw
-rwxr-xr-x	2634	align_seq	blob \| history \| raw
-rwxr-xr-x	2000	analyze_bed	blob \| history \| raw
-rwxr-xr-x	2107	analyze_seq	blob \| history \| raw
-rwxr-xr-x	2783	analyze_tags	blob \| history \| raw
-rwxr-xr-x	4817	analyze_vals	blob \| history \| raw
-rwxr-xr-x	3307	assemble_tag_contigs	blob \| history \| raw
-rwxr-xr-x	8065	blast_seq	blob \| history \| raw
-rwxr-xr-x	4483	blat_seq	blob \| history \| raw
-rwxr-xr-x	2798	calc_bit_scores	blob \| history \| raw
-rwxr-xr-x	3433	calc_fixedstep	blob \| history \| raw
-rwxr-xr-x	2270	complement_seq	blob \| history \| raw
-rwxr-xr-x	2697	compute	blob \| history \| raw
-rwxr-xr-x	2629	count_records	blob \| history \| raw
-rwxr-xr-x	3538	count_vals	blob \| history \| raw
-rwxr-xr-x	2885	create_blast_db	blob \| history \| raw
-rwxr-xr-x	3222	create_vmatch_index	blob \| history \| raw
-rwxr-xr-x	2888	create_weight_matrix	blob \| history \| raw
-rwxr-xr-x	3633	extract_seq	blob \| history \| raw
-rwxr-xr-x	2388	flip_tab	blob \| history \| raw
-rwxr-xr-x	2494	fold_seq	blob \| history \| raw
-rwxr-xr-x	4911	format_genome	blob \| history \| raw
-rwxr-xr-x	6173	get_genome_align	blob \| history \| raw
-rwxr-xr-x	5145	get_genome_phastcons	blob \| history \| raw
-rwxr-xr-x	7886	get_genome_seq	blob \| history \| raw
-rwxr-xr-x	9070	grab	blob \| history \| raw
-rwxr-xr-x	2137	head_records	blob \| history \| raw
-rwxr-xr-x	2531	invert_align	blob \| history \| raw
-rwxr-xr-x	2487	length_seq	blob \| history \| raw
-rwxr-xr-x	2243	length_vals	blob \| history \| raw
-rwxr-xr-x	1993	list_biopieces	blob \| history \| raw
-rwxr-xr-x	2355	list_genomes	blob \| history \| raw
lrwxrwxrwx	34	lowercase_seq -> ../code_python/Cjung/lowercase_seq	blob \| history \| raw
-rwxr-xr-x	2873	match_seq	blob \| history \| raw
-rwxr-xr-x	3004	max_vals	blob \| history \| raw
-rwxr-xr-x	2983	mean_vals	blob \| history \| raw
-rwxr-xr-x	2923	median_vals	blob \| history \| raw
-rwxr-xr-x	5970	merge_records	blob \| history \| raw
-rwxr-xr-x	2619	merge_vals	blob \| history \| raw
-rwxr-xr-x	3004	min_vals	blob \| history \| raw
-rwxr-xr-x	2775	oligo_freq	blob \| history \| raw
-rwxr-xr-x	6675	patscan_seq	blob \| history \| raw
-rwxr-xr-x	4282	plot_chrdist	blob \| history \| raw
-rwxr-xr-x	3790	plot_histogram	blob \| history \| raw
-rwxr-xr-x	3107	plot_karyogram	blob \| history \| raw
-rwxr-xr-x	3609	plot_lendist	blob \| history \| raw
-rwxr-xr-x	6972	plot_matches	blob \| history \| raw
-rwxr-xr-x	5065	plot_phastcons_profiles	blob \| history \| raw
-rwxr-xr-x	2560	plot_seqlogo	blob \| history \| raw
-rwxr-xr-x	2234	print_wiki	blob \| history \| raw
-rwxr-xr-x	2983	random_records	blob \| history \| raw
-rwxr-xr-x	3129	read_2bit	blob \| history \| raw
-rwxr-xr-x	3067	read_bed	blob \| history \| raw
-rwxr-xr-x	3746	read_blast_tab	blob \| history \| raw
-rwxr-xr-x	4099	read_embl	blob \| history \| raw
-rwxr-xr-x	2702	read_fasta	blob \| history \| raw
-rwxr-xr-x	2718	read_fixedstep	blob \| history \| raw
-rwxr-xr-x	2610	read_gff	blob \| history \| raw
-rwxr-xr-x	2986	read_mysql	blob \| history \| raw
-rwxr-xr-x	2652	read_psl	blob \| history \| raw
-rwxr-xr-x	4032	read_soft	blob \| history \| raw
-rwxr-xr-x	3521	read_solexa	blob \| history \| raw
-rwxr-xr-x	3503	read_solid	blob \| history \| raw
-rwxr-xr-x	3286	read_stockholm	blob \| history \| raw
-rwxr-xr-x	3887	read_tab	blob \| history \| raw
-rwxr-xr-x	2682	read_ucsc_config	blob \| history \| raw
-rwxr-xr-x	3761	remove_adaptor	blob \| history \| raw
-rwxr-xr-x	1962	remove_indels	blob \| history \| raw
-rwxr-xr-x	2540	remove_keys	blob \| history \| raw
-rwxr-xr-x	3838	remove_mysql_tables	blob \| history \| raw
-rwxr-xr-x	4963	remove_ucsc_tracks	blob \| history \| raw
-rwxr-xr-x	2266	rename_keys	blob \| history \| raw
-rwxr-xr-x	1966	reverse_seq	blob \| history \| raw
-rwxr-xr-x	1999	shuffle_seq	blob \| history \| raw
-rwxr-xr-x	4793	soap_seq	blob \| history \| raw
-rwxr-xr-x	3047	sort_records	blob \| history \| raw
-rwxr-xr-x	3165	split_bed	blob \| history \| raw
-rwxr-xr-x	3243	split_seq	blob \| history \| raw
-rwxr-xr-x	2951	split_vals	blob \| history \| raw
-rwxr-xr-x	2777	sum_vals	blob \| history \| raw
-rwxr-xr-x	2920	tile_seq	blob \| history \| raw
-rwxr-xr-x	2696	translate_seq	blob \| history \| raw
-rwxr-xr-x	2734	transliterate_seq	blob \| history \| raw
-rwxr-xr-x	2971	transliterate_vals	blob \| history \| raw
-rwxr-xr-x	2818	uniq_vals	blob \| history \| raw
-rwxr-xr-x	8760	upload_to_ucsc	blob \| history \| raw
-rwxr-xr-x	1960	uppercase_seq	blob \| history \| raw
-rwxr-xr-x	8093	vmatch_seq	blob \| history \| raw
-rwxr-xr-x	3206	write_2bit	blob \| history \| raw
-rwxr-xr-x	3272	write_align	blob \| history \| raw
-rwxr-xr-x	3136	write_bed	blob \| history \| raw
-rwxr-xr-x	4360	write_blast	blob \| history \| raw
-rwxr-xr-x	2809	write_fasta	blob \| history \| raw
-rwxr-xr-x	2660	write_fixedstep	blob \| history \| raw
-rwxr-xr-x	2732	write_psl	blob \| history \| raw
-rwxr-xr-x	2899	write_solid	blob \| history \| raw
-rwxr-xr-x	4792	write_tab	blob \| history \| raw
-rwxr-xr-x	2469	write_ucsc_config	blob \| history \| raw