git.donarmstrong.com Git - biopieces.git/tree

drwxr-xr-x		..
-rw-r--r--	88	00README	blob \| history \| raw
-rwxr-xr-x	3556	BGB_delete_track	blob \| history \| raw
-rwxr-xr-x	4248	BGB_intersect	blob \| history \| raw
-rwxr-xr-x	3884	BGB_list	blob \| history \| raw
-rwxr-xr-x	3778	BGB_read_track	blob \| history \| raw
-rwxr-xr-x	6044	BGB_upload	blob \| history \| raw
-rwxr-xr-x	2373	add_ident	blob \| history \| raw
-rwxr-xr-x	2638	align_pair_seq	blob \| history \| raw
-rwxr-xr-x	2683	align_seq	blob \| history \| raw
-rwxr-xr-x	2011	analyze_bed	blob \| history \| raw
-rwxr-xr-x	2061	analyze_gc	blob \| history \| raw
-rwxr-xr-x	3942	analyze_seq	blob \| history \| raw
-rwxr-xr-x	3860	analyze_snp	blob \| history \| raw
-rwxr-xr-x	2794	analyze_tags	blob \| history \| raw
-rwxr-xr-x	5079	analyze_vals	blob \| history \| raw
-rwxr-xr-x	4899	assemble_contigs	blob \| history \| raw
-rwxr-xr-x	4041	assemble_tag_contigs	blob \| history \| raw
-rwxr-xr-x	2200	bioscript	blob \| history \| raw
-rwxr-xr-x	5812	biostat	blob \| history \| raw
-rwxr-xr-x	8554	blast_seq	blob \| history \| raw
-rwxr-xr-x	5039	blat_seq	blob \| history \| raw
-rwxr-xr-x	6463	bowtie_seq	blob \| history \| raw
-rwxr-xr-x	4681	bwa_seq	blob \| history \| raw
-rwxr-xr-x	2809	calc_bit_scores	blob \| history \| raw
-rwxr-xr-x	3548	calc_fixedstep	blob \| history \| raw
-rwxr-xr-x	4803	cluster_seq	blob \| history \| raw
-rwxr-xr-x	2281	complement_seq	blob \| history \| raw
-rwxr-xr-x	2967	compute	blob \| history \| raw
-rwxr-xr-x	2640	count_records	blob \| history \| raw
-rwxr-xr-x	3549	count_vals	blob \| history \| raw
-rwxr-xr-x	3398	create_blast_index	blob \| history \| raw
-rwxr-xr-x	3184	create_bowtie_index	blob \| history \| raw
-rwxr-xr-x	3166	create_bwa_index	blob \| history \| raw
-rwxr-xr-x	3113	create_seq_index	blob \| history \| raw
-rwxr-xr-x	3157	create_vmatch_index	blob \| history \| raw
-rwxr-xr-x	2899	create_weight_matrix	blob \| history \| raw
-rwxr-xr-x	2952	embl_index	blob \| history \| raw
-rwxr-xr-x	3644	extract_seq	blob \| history \| raw
-rwxr-xr-x	3597	find_genes	blob \| history \| raw
-rwxr-xr-x	2399	flip_tab	blob \| history \| raw
-rwxr-xr-x	2505	fold_seq	blob \| history \| raw
-rwxr-xr-x	5509	format_genome	blob \| history \| raw
-rwxr-xr-x	4828	get_embl_entry	blob \| history \| raw
-rwxr-xr-x	6184	get_genome_align	blob \| history \| raw
-rwxr-xr-x	5156	get_genome_phastcons	blob \| history \| raw
-rwxr-xr-x	8139	get_genome_seq	blob \| history \| raw
-rwxr-xr-x	5569	get_seq	blob \| history \| raw
-rwxr-xr-x	9218	grab	blob \| history \| raw
-rwxr-xr-x	2148	head_records	blob \| history \| raw
-rwxr-xr-x	3386	indel_seq	blob \| history \| raw
-rwxr-xr-x	3955	intersect_records	blob \| history \| raw
-rwxr-xr-x	2542	invert_align	blob \| history \| raw
-rwxr-xr-x	2498	length_seq	blob \| history \| raw
-rwxr-xr-x	2254	length_vals	blob \| history \| raw
-rwxr-xr-x	2006	list_biopieces	blob \| history \| raw
-rwxr-xr-x	2425	list_genomes	blob \| history \| raw
-rwxr-xr-x	2217	list_mysql_databases	blob \| history \| raw
lrwxrwxrwx	34	lowercase_seq -> ../code_python/Cjung/lowercase_seq	blob \| history \| raw
-rwxr-xr-x	2858	match_seq	blob \| history \| raw
-rwxr-xr-x	4273	mate_pair_dist	blob \| history \| raw
-rwxr-xr-x	3015	max_vals	blob \| history \| raw
-rwxr-xr-x	2994	mean_vals	blob \| history \| raw
-rwxr-xr-x	2934	median_vals	blob \| history \| raw
-rwxr-xr-x	5981	merge_records	blob \| history \| raw
-rwxr-xr-x	2630	merge_vals	blob \| history \| raw
-rwxr-xr-x	3015	min_vals	blob \| history \| raw
-rwxr-xr-x	3274	mutate_seq	blob \| history \| raw
-rwxr-xr-x	2786	oligo_freq	blob \| history \| raw
-rwxr-xr-x	6682	patscan_seq	blob \| history \| raw
-rwxr-xr-x	4450	plot_chrdist	blob \| history \| raw
-rwxr-xr-x	3960	plot_histogram	blob \| history \| raw
-rwxr-xr-x	3118	plot_karyogram	blob \| history \| raw
-rwxr-xr-x	3778	plot_lendist	blob \| history \| raw
-rwxr-xr-x	4585	plot_lines	blob \| history \| raw
-rwxr-xr-x	6983	plot_matches	blob \| history \| raw
-rwxr-xr-x	5237	plot_phastcons_profiles	blob \| history \| raw
-rwxr-xr-x	2571	plot_seqlogo	blob \| history \| raw
-rwxr-xr-x	2263	print_wiki	blob \| history \| raw
-rwxr-xr-x	2994	random_records	blob \| history \| raw
-rwxr-xr-x	3140	read_2bit	blob \| history \| raw
-rwxr-xr-x	2786	read_ace	blob \| history \| raw
-rwxr-xr-x	3078	read_bed	blob \| history \| raw
-rwxr-xr-x	3757	read_blast_tab	blob \| history \| raw
-rwxr-xr-x	3145	read_embl	blob \| history \| raw
-rwxr-xr-x	2713	read_fasta	blob \| history \| raw
-rwxr-xr-x	3432	read_fastq	blob \| history \| raw
-rwxr-xr-x	2729	read_fixedstep	blob \| history \| raw
-rwxr-xr-x	2703	read_gff	blob \| history \| raw
-rwxr-xr-x	2713	read_kiss	blob \| history \| raw
-rwxr-xr-x	2967	read_mysql	blob \| history \| raw
-rwxr-xr-x	2761	read_psl	blob \| history \| raw
-rwxr-xr-x	2707	read_sam	blob \| history \| raw
-rwxr-xr-x	4131	read_soft	blob \| history \| raw
-rwxr-xr-x	3508	read_solexa	blob \| history \| raw
-rwxr-xr-x	3514	read_solid	blob \| history \| raw
-rwxr-xr-x	3297	read_stockholm	blob \| history \| raw
-rwxr-xr-x	4140	read_tab	blob \| history \| raw
-rwxr-xr-x	2693	read_ucsc_config	blob \| history \| raw
-rwxr-xr-x	3772	remove_adaptor	blob \| history \| raw
-rwxr-xr-x	2033	remove_indels	blob \| history \| raw
-rwxr-xr-x	2551	remove_keys	blob \| history \| raw
-rwxr-xr-x	4012	remove_mysql_tables	blob \| history \| raw
-rwxr-xr-x	4974	remove_ucsc_tracks	blob \| history \| raw
-rwxr-xr-x	2277	rename_keys	blob \| history \| raw
-rwxr-xr-x	3587	rescan_seq	blob \| history \| raw
-rwxr-xr-x	1977	reverse_seq	blob \| history \| raw
-rwxr-xr-x	2010	shuffle_seq	blob \| history \| raw
-rwxr-xr-x	4804	soap_seq	blob \| history \| raw
-rwxr-xr-x	3058	sort_records	blob \| history \| raw
-rwxr-xr-x	3176	split_bed	blob \| history \| raw
-rwxr-xr-x	3062	split_seq	blob \| history \| raw
-rwxr-xr-x	2962	split_vals	blob \| history \| raw
-rwxr-xr-x	2788	sum_vals	blob \| history \| raw
-rwxr-xr-x	860	swapcase_seq	blob \| history \| raw
-rwxr-xr-x	2931	tile_seq	blob \| history \| raw
-rwxr-xr-x	2708	translate_seq	blob \| history \| raw
-rwxr-xr-x	2745	transliterate_seq	blob \| history \| raw
-rwxr-xr-x	2982	transliterate_vals	blob \| history \| raw
-rwxr-xr-x	2829	uniq_vals	blob \| history \| raw
-rwxr-xr-x	8771	upload_to_ucsc	blob \| history \| raw
-rwxr-xr-x	1971	uppercase_seq	blob \| history \| raw
-rwxr-xr-x	8104	vmatch_seq	blob \| history \| raw
-rwxr-xr-x	3217	write_2bit	blob \| history \| raw
-rwxr-xr-x	3283	write_align	blob \| history \| raw
-rwxr-xr-x	3147	write_bed	blob \| history \| raw
-rwxr-xr-x	4371	write_blast	blob \| history \| raw
-rwxr-xr-x	2820	write_fasta	blob \| history \| raw
-rwxr-xr-x	2683	write_fastq	blob \| history \| raw
-rwxr-xr-x	2671	write_fixedstep	blob \| history \| raw
-rwxr-xr-x	2805	write_gff	blob \| history \| raw
-rwxr-xr-x	2638	write_kiss	blob \| history \| raw
-rwxr-xr-x	10401	write_mysql	blob \| history \| raw
-rwxr-xr-x	2753	write_psl	blob \| history \| raw
-rwxr-xr-x	2910	write_solid	blob \| history \| raw
-rwxr-xr-x	4803	write_tab	blob \| history \| raw
-rwxr-xr-x	2480	write_ucsc_config	blob \| history \| raw