git.donarmstrong.com Git - biopieces.git/tree

drwxr-xr-x		..
-rw-r--r--	88	00README	blob \| history \| raw
-rwxr-xr-x	68	add_ident	blob \| history \| raw
-rwxr-xr-x	68	align_seq	blob \| history \| raw
-rwxr-xr-x	68	analyze_bed	blob \| history \| raw
-rwxr-xr-x	68	analyze_seq	blob \| history \| raw
-rwxr-xr-x	68	analyze_tags	blob \| history \| raw
-rwxr-xr-x	68	analyze_vals	blob \| history \| raw
-rwxr-xr-x	68	assemble_tag_contigs	blob \| history \| raw
-rwxr-xr-x	8301	blast_seq	blob \| history \| raw
-rwxr-xr-x	68	blat_seq	blob \| history \| raw
-rwxr-xr-x	68	calc_bit_scores	blob \| history \| raw
-rwxr-xr-x	68	calc_fixedstep	blob \| history \| raw
-rwxr-xr-x	68	complement_seq	blob \| history \| raw
-rwxr-xr-x	68	complexity_seq	blob \| history \| raw
-rwxr-xr-x	68	compute	blob \| history \| raw
-rwxr-xr-x	68	count_records	blob \| history \| raw
-rwxr-xr-x	68	count_vals	blob \| history \| raw
-rwxr-xr-x	3073	create_blast_db	blob \| history \| raw
-rwxr-xr-x	68	create_vmatch_index	blob \| history \| raw
-rwxr-xr-x	68	create_weight_matrix	blob \| history \| raw
-rwxr-xr-x	3140	extract_seq	blob \| history \| raw
-rwxr-xr-x	68	flip_tab	blob \| history \| raw
-rwxr-xr-x	68	fold_seq	blob \| history \| raw
-rwxr-xr-x	5098	format_genome	blob \| history \| raw
-rwxr-xr-x	68	get_genome_align	blob \| history \| raw
-rwxr-xr-x	68	get_genome_phastcons	blob \| history \| raw
-rwxr-xr-x	8067	get_genome_seq	blob \| history \| raw
-rwxr-xr-x	9260	grab	blob \| history \| raw
-rwxr-xr-x	68	head_records	blob \| history \| raw
-rwxr-xr-x	68	invert_align	blob \| history \| raw
-rwxr-xr-x	68	length_seq	blob \| history \| raw
-rwxr-xr-x	68	length_vals	blob \| history \| raw
-rwxr-xr-x	2174	list_biopieces	blob \| history \| raw
-rwxr-xr-x	2536	list_genomes	blob \| history \| raw
lrwxrwxrwx	34	lowercase_seq -> ../code_python/Cjung/lowercase_seq	blob \| history \| raw
-rwxr-xr-x	68	match_seq	blob \| history \| raw
-rwxr-xr-x	68	max_vals	blob \| history \| raw
-rwxr-xr-x	68	mean_vals	blob \| history \| raw
-rwxr-xr-x	68	median_vals	blob \| history \| raw
-rwxr-xr-x	68	merge_records	blob \| history \| raw
-rwxr-xr-x	68	merge_vals	blob \| history \| raw
-rwxr-xr-x	68	min_vals	blob \| history \| raw
-rwxr-xr-x	68	oligo_freq	blob \| history \| raw
-rwxr-xr-x	68	patscan_seq	blob \| history \| raw
-rwxr-xr-x	68	plot_chrdist	blob \| history \| raw
-rwxr-xr-x	68	plot_histogram	blob \| history \| raw
-rwxr-xr-x	68	plot_karyogram	blob \| history \| raw
-rwxr-xr-x	68	plot_lendist	blob \| history \| raw
-rwxr-xr-x	68	plot_matches	blob \| history \| raw
-rwxr-xr-x	68	plot_phastcons_profiles	blob \| history \| raw
-rwxr-xr-x	68	plot_seqlogo	blob \| history \| raw
-rwxr-xr-x	68	print_usage	blob \| history \| raw
-rwxr-xr-x	68	random_records	blob \| history \| raw
-rwxr-xr-x	68	read_2bit	blob \| history \| raw
-rwxr-xr-x	68	read_bed	blob \| history \| raw
-rwxr-xr-x	68	read_blast_tab	blob \| history \| raw
-rwxr-xr-x	68	read_embl	blob \| history \| raw
-rwxr-xr-x	2887	read_fasta	blob \| history \| raw
-rwxr-xr-x	68	read_fixedstep	blob \| history \| raw
-rwxr-xr-x	68	read_gff	blob \| history \| raw
-rwxr-xr-x	68	read_mysql	blob \| history \| raw
-rwxr-xr-x	68	read_phastcons	blob \| history \| raw
-rwxr-xr-x	68	read_psl	blob \| history \| raw
-rwxr-xr-x	68	read_soft	blob \| history \| raw
-rwxr-xr-x	68	read_solexa	blob \| history \| raw
-rwxr-xr-x	68	read_solid	blob \| history \| raw
-rwxr-xr-x	68	read_stockholm	blob \| history \| raw
-rwxr-xr-x	4078	read_tab	blob \| history \| raw
-rwxr-xr-x	68	read_ucsc_config	blob \| history \| raw
-rwxr-xr-x	68	remove_adaptor	blob \| history \| raw
-rwxr-xr-x	68	remove_indels	blob \| history \| raw
-rwxr-xr-x	68	remove_keys	blob \| history \| raw
-rwxr-xr-x	68	remove_mysql_tables	blob \| history \| raw
-rwxr-xr-x	68	remove_ucsc_tracks	blob \| history \| raw
-rwxr-xr-x	68	rename_keys	blob \| history \| raw
-rwxr-xr-x	68	reverse_seq	blob \| history \| raw
-rwxr-xr-x	68	shuffle_seq	blob \| history \| raw
-rwxr-xr-x	68	soap_seq	blob \| history \| raw
-rwxr-xr-x	68	sort_records	blob \| history \| raw
-rwxr-xr-x	68	split_bed	blob \| history \| raw
-rwxr-xr-x	68	split_seq	blob \| history \| raw
-rwxr-xr-x	3140	split_vals	blob \| history \| raw
-rwxr-xr-x	68	sum_vals	blob \| history \| raw
-rwxr-xr-x	68	tile_seq	blob \| history \| raw
-rwxr-xr-x	68	translate_seq	blob \| history \| raw
-rwxr-xr-x	68	transliterate_seq	blob \| history \| raw
-rwxr-xr-x	68	transliterate_vals	blob \| history \| raw
-rwxr-xr-x	68	uniq_vals	blob \| history \| raw
-rwxr-xr-x	68	upload_to_ucsc	blob \| history \| raw
-rwxr-xr-x	2185	uppercase_seq	blob \| history \| raw
-rwxr-xr-x	8281	vmatch_seq	blob \| history \| raw
-rwxr-xr-x	68	write_2bit	blob \| history \| raw
-rwxr-xr-x	68	write_align	blob \| history \| raw
-rwxr-xr-x	68	write_bed	blob \| history \| raw
-rwxr-xr-x	4534	write_blast	blob \| history \| raw
-rwxr-xr-x	2996	write_fasta	blob \| history \| raw
-rwxr-xr-x	68	write_fixedstep	blob \| history \| raw
-rwxr-xr-x	68	write_psl	blob \| history \| raw
-rwxr-xr-x	68	write_solid	blob \| history \| raw
-rwxr-xr-x	4979	write_tab	blob \| history \| raw
-rwxr-xr-x	68	write_ucsc_config	blob \| history \| raw