git.donarmstrong.com Git - biopieces.git/tree

drwxr-xr-x		..
-rw-r--r--	88	00README	blob \| history \| raw
-rwxr-xr-x	2551	add_ident	blob \| history \| raw
-rwxr-xr-x	2775	align_seq	blob \| history \| raw
-rwxr-xr-x	2189	analyze_bed	blob \| history \| raw
-rwxr-xr-x	2296	analyze_seq	blob \| history \| raw
-rwxr-xr-x	2972	analyze_tags	blob \| history \| raw
-rwxr-xr-x	5004	analyze_vals	blob \| history \| raw
-rwxr-xr-x	3537	assemble_tag_contigs	blob \| history \| raw
-rwxr-xr-x	8301	blast_seq	blob \| history \| raw
-rwxr-xr-x	4714	blat_seq	blob \| history \| raw
-rwxr-xr-x	2987	calc_bit_scores	blob \| history \| raw
-rwxr-xr-x	3662	calc_fixedstep	blob \| history \| raw
-rwxr-xr-x	2458	complement_seq	blob \| history \| raw
-rwxr-xr-x	68	complexity_seq	blob \| history \| raw
-rwxr-xr-x	2884	compute	blob \| history \| raw
-rwxr-xr-x	2816	count_records	blob \| history \| raw
-rwxr-xr-x	3767	count_vals	blob \| history \| raw
-rwxr-xr-x	3073	create_blast_db	blob \| history \| raw
-rwxr-xr-x	3411	create_vmatch_index	blob \| history \| raw
-rwxr-xr-x	3075	create_weight_matrix	blob \| history \| raw
-rwxr-xr-x	3822	extract_seq	blob \| history \| raw
-rwxr-xr-x	2575	flip_tab	blob \| history \| raw
-rwxr-xr-x	2681	fold_seq	blob \| history \| raw
-rwxr-xr-x	5098	format_genome	blob \| history \| raw
-rwxr-xr-x	68	get_genome_align	blob \| history \| raw
-rwxr-xr-x	68	get_genome_phastcons	blob \| history \| raw
-rwxr-xr-x	8067	get_genome_seq	blob \| history \| raw
-rwxr-xr-x	9260	grab	blob \| history \| raw
-rwxr-xr-x	2326	head_records	blob \| history \| raw
-rwxr-xr-x	2720	invert_align	blob \| history \| raw
-rwxr-xr-x	2676	length_seq	blob \| history \| raw
-rwxr-xr-x	2432	length_vals	blob \| history \| raw
-rwxr-xr-x	2174	list_biopieces	blob \| history \| raw
-rwxr-xr-x	2536	list_genomes	blob \| history \| raw
lrwxrwxrwx	34	lowercase_seq -> ../code_python/Cjung/lowercase_seq	blob \| history \| raw
-rwxr-xr-x	3125	match_seq	blob \| history \| raw
-rwxr-xr-x	3193	max_vals	blob \| history \| raw
-rwxr-xr-x	3172	mean_vals	blob \| history \| raw
-rwxr-xr-x	3112	median_vals	blob \| history \| raw
-rwxr-xr-x	6201	merge_records	blob \| history \| raw
-rwxr-xr-x	2808	merge_vals	blob \| history \| raw
-rwxr-xr-x	3193	min_vals	blob \| history \| raw
-rwxr-xr-x	2964	oligo_freq	blob \| history \| raw
-rwxr-xr-x	6887	patscan_seq	blob \| history \| raw
-rwxr-xr-x	68	plot_chrdist	blob \| history \| raw
-rwxr-xr-x	68	plot_histogram	blob \| history \| raw
-rwxr-xr-x	68	plot_karyogram	blob \| history \| raw
-rwxr-xr-x	68	plot_lendist	blob \| history \| raw
-rwxr-xr-x	68	plot_matches	blob \| history \| raw
-rwxr-xr-x	68	plot_phastcons_profiles	blob \| history \| raw
-rwxr-xr-x	68	plot_seqlogo	blob \| history \| raw
-rwxr-xr-x	68	print_usage	blob \| history \| raw
-rwxr-xr-x	2414	print_wiki	blob \| history \| raw
-rwxr-xr-x	3213	random_records	blob \| history \| raw
-rwxr-xr-x	68	read_2bit	blob \| history \| raw
-rwxr-xr-x	68	read_bed	blob \| history \| raw
-rwxr-xr-x	68	read_blast_tab	blob \| history \| raw
-rwxr-xr-x	68	read_embl	blob \| history \| raw
-rwxr-xr-x	2887	read_fasta	blob \| history \| raw
-rwxr-xr-x	68	read_fixedstep	blob \| history \| raw
-rwxr-xr-x	68	read_gff	blob \| history \| raw
-rwxr-xr-x	68	read_mysql	blob \| history \| raw
-rwxr-xr-x	68	read_phastcons	blob \| history \| raw
-rwxr-xr-x	68	read_psl	blob \| history \| raw
-rwxr-xr-x	68	read_soft	blob \| history \| raw
-rwxr-xr-x	68	read_solexa	blob \| history \| raw
-rwxr-xr-x	68	read_solid	blob \| history \| raw
-rwxr-xr-x	68	read_stockholm	blob \| history \| raw
-rwxr-xr-x	4078	read_tab	blob \| history \| raw
-rwxr-xr-x	68	read_ucsc_config	blob \| history \| raw
-rwxr-xr-x	68	remove_adaptor	blob \| history \| raw
-rwxr-xr-x	68	remove_indels	blob \| history \| raw
-rwxr-xr-x	68	remove_keys	blob \| history \| raw
-rwxr-xr-x	68	remove_mysql_tables	blob \| history \| raw
-rwxr-xr-x	68	remove_ucsc_tracks	blob \| history \| raw
-rwxr-xr-x	68	rename_keys	blob \| history \| raw
-rwxr-xr-x	2152	reverse_seq	blob \| history \| raw
-rwxr-xr-x	2185	shuffle_seq	blob \| history \| raw
-rwxr-xr-x	68	soap_seq	blob \| history \| raw
-rwxr-xr-x	3048	sort_records	blob \| history \| raw
-rwxr-xr-x	3354	split_bed	blob \| history \| raw
-rwxr-xr-x	3432	split_seq	blob \| history \| raw
-rwxr-xr-x	3140	split_vals	blob \| history \| raw
-rwxr-xr-x	2966	sum_vals	blob \| history \| raw
-rwxr-xr-x	3109	tile_seq	blob \| history \| raw
-rwxr-xr-x	2885	translate_seq	blob \| history \| raw
-rwxr-xr-x	2923	transliterate_seq	blob \| history \| raw
-rwxr-xr-x	3160	transliterate_vals	blob \| history \| raw
-rwxr-xr-x	68	uniq_vals	blob \| history \| raw
-rwxr-xr-x	68	upload_to_ucsc	blob \| history \| raw
-rwxr-xr-x	2146	uppercase_seq	blob \| history \| raw
-rwxr-xr-x	8281	vmatch_seq	blob \| history \| raw
-rwxr-xr-x	68	write_2bit	blob \| history \| raw
-rwxr-xr-x	3459	write_align	blob \| history \| raw
-rwxr-xr-x	68	write_bed	blob \| history \| raw
-rwxr-xr-x	4534	write_blast	blob \| history \| raw
-rwxr-xr-x	2996	write_fasta	blob \| history \| raw
-rwxr-xr-x	68	write_fixedstep	blob \| history \| raw
-rwxr-xr-x	68	write_psl	blob \| history \| raw
-rwxr-xr-x	68	write_solid	blob \| history \| raw
-rwxr-xr-x	4979	write_tab	blob \| history \| raw
-rwxr-xr-x	68	write_ucsc_config	blob \| history \| raw