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mothur.git
2010-06-02 westcottadded classify.otu command commit | commitdiff | tree | snapshot
2010-06-01 westcottchanged the daughterLevels in classifiers summary file... commit | commitdiff | tree | snapshot
2010-06-01 westcottlatest version commit | commitdiff | tree | snapshot
2010-05-28 westcottfinished cluster.split adding classify method. commit | commitdiff | tree | snapshot
2010-05-28 westcottchanged hard parameter in cluster commands commit | commitdiff | tree | snapshot
2010-05-27 westcottfixed project commit | commitdiff | tree | snapshot
2010-05-27 westcottchanges to chop.seqs commit | commitdiff | tree | snapshot
2010-05-26 pschlossfixed bugs with trim.seqs and bdiffs commit | commitdiff | tree | snapshot
2010-05-20 westcott cluster.split command commit | commitdiff | tree | snapshot
2010-05-20 westcottfixed phylip convert for cluster.split command commit | commitdiff | tree | snapshot
2010-05-20 westcottadded cluster.split command commit | commitdiff | tree | snapshot
2010-05-18 westcottadded split.abund comand commit | commitdiff | tree | snapshot
2010-05-17 westcottchange to phylo.diversity to make output = total branch... commit | commitdiff | tree | snapshot
2010-05-14 westcott1.10.0 commit | commitdiff | tree | snapshot
2010-05-12 westcottmodified freq parameter be a percentage of numSeqs... commit | commitdiff | tree | snapshot
2010-05-11 westcottadded clearcut command commit | commitdiff | tree | snapshot
2010-05-10 westcottadded chop.seqs command commit | commitdiff | tree | snapshot
2010-05-10 westcottfixed problem with class.fy.seqs where group totals... commit | commitdiff | tree | snapshot
2010-05-10 westcottadded make.group command commit | commitdiff | tree | snapshot
2010-05-10 westcottworked on trim.seqs commit | commitdiff | tree | snapshot
2010-05-10 westcottworked on trim.seqs commit | commitdiff | tree | snapshot
2010-05-10 pschlosspds - modified strip barcode funcrtion in trimseqscommand commit | commitdiff | tree | snapshot
2010-05-07 westcottchanged confidence scores calculation in bayesian commit | commitdiff | tree | snapshot
2010-05-07 westcottmodified trim.seqs to account for primers of different... commit | commitdiff | tree | snapshot
2010-05-07 westcottadded diffs to trim.seqs commit | commitdiff | tree | snapshot
2010-05-07 westcottworking on trim.seqs commit | commitdiff | tree | snapshot
2010-05-07 westcottchanged groupfile in classify.seqs to reflect multiple... commit | commitdiff | tree | snapshot
2010-05-05 westcottfilled out reference taxonomy with "unclassified" so... commit | commitdiff | tree | snapshot
2010-05-04 westcottenabled ~ commit | commitdiff | tree | snapshot
2010-05-04 westcottfixed bug that caused bayesian cutoff not to work if... commit | commitdiff | tree | snapshot
2010-05-04 westcottadded phylo.diversity command. added hard parameter... commit | commitdiff | tree | snapshot
2010-04-30 westcottmade get.oturep more memory efficient by breaking the... commit | commitdiff | tree | snapshot
2010-04-30 westcottparalellized trim.seqs commit | commitdiff | tree | snapshot
2010-04-29 westcottparalellized summary.seqs and added mpi code to it. commit | commitdiff | tree | snapshot
2010-04-29 westcottparalellized screen.seqs and added mpi code to it.... commit | commitdiff | tree | snapshot
2010-04-28 westcottadded set.logfile command commit | commitdiff | tree | snapshot
2010-04-27 westcottadded name parameter to phylotype command commit | commitdiff | tree | snapshot
2010-04-27 westcottreworked the classifiers summary file added groupfile... commit | commitdiff | tree | snapshot
2010-04-26 westcottmade classifier faster commit | commitdiff | tree | snapshot
2010-04-20 westcotta few modifications for 1.9 commit | commitdiff | tree | snapshot
2010-04-20 westcotta few modifications for 1.9 commit | commitdiff | tree | snapshot
2010-04-17 westcott1.9 commit | commitdiff | tree | snapshot
2010-04-16 westcott1.9 commit | commitdiff | tree | snapshot
2010-04-14 pschlosspat's minor edits to distance calculations commit | commitdiff | tree | snapshot
2010-04-14 westcottsome changes while testing 1.9 commit | commitdiff | tree | snapshot
2010-04-07 westcottadded MPI code, broke up chimera.seqs into 5 separated... commit | commitdiff | tree | snapshot
2010-03-17 westcottfinished mpi for filter.seqs commit | commitdiff | tree | snapshot
2010-03-17 westcotttesting commit | commitdiff | tree | snapshot
2010-03-16 westcottmodified mpi code to save ram by writing out every... commit | commitdiff | tree | snapshot
2010-03-12 westcottadded MPI to dist.seqs command commit | commitdiff | tree | snapshot
2010-03-11 westcotttesting mpi commit | commitdiff | tree | snapshot
2010-03-04 westcottmothur with external build commit | commitdiff | tree | snapshot
2010-03-04 westcottchanges to filter.seqs commit | commitdiff | tree | snapshot
2010-03-03 westcottadded checks for ^C to quit command instead of program commit | commitdiff | tree | snapshot
2010-03-01 westcottadding mothurout.h and .cpp to repo commit | commitdiff | tree | snapshot
2010-02-26 westcottfilter.seqs can now accept multiple fasta files commit | commitdiff | tree | snapshot
2010-02-26 westcottcreated mothurOut class to handle logfiles commit | commitdiff | tree | snapshot
2010-02-25 westcottadded parse.list command commit | commitdiff | tree | snapshot
2010-02-24 westcottfinished chimera changes commit | commitdiff | tree | snapshot
2010-02-23 westcottadded warning about merging with something above cutoff... commit | commitdiff | tree | snapshot
2010-02-23 westcottadded warning about merging with something above cutoff... commit | commitdiff | tree | snapshot
2010-02-22 westcottchimeras, fix to sabundvector and sharedsabundvector... commit | commitdiff | tree | snapshot
2010-02-17 westcottchimeras commit | commitdiff | tree | snapshot
2010-02-16 westcottchimeracode commit | commitdiff | tree | snapshot
2010-02-12 westcottworking on chimeras commit | commitdiff | tree | snapshot
2010-02-04 pschlosstest commit | commitdiff | tree | snapshot
2010-02-04 pschlosspat's ../ bug fix - test commit | commitdiff | tree | snapshot
2010-02-04 pschlosspat's ../ bug fix commit | commitdiff | tree | snapshot
2010-02-03 westcottadded name option to read.tree for use in unifrac and... commit | commitdiff | tree | snapshot
2010-02-02 pschlosspat's differences before v.1.8 commit | commitdiff | tree | snapshot
2010-02-02 westcottfixed bugs for 1.8 commit | commitdiff | tree | snapshot
2010-01-28 westcottfixed some bugs found while testing 1.8 commit | commitdiff | tree | snapshot
2010-01-27 westcottfixed some bugs found while testing 1.8 commit | commitdiff | tree | snapshot
2010-01-27 westcottadded distance search method to classify.seqs commit | commitdiff | tree | snapshot
2010-01-26 westcottadded set.dir command and modified commands to redirect... commit | commitdiff | tree | snapshot
2010-01-26 pschlosspat's edits from 1/26/2010 commit | commitdiff | tree | snapshot
2010-01-19 westcottadded out.hierarchy command commit | commitdiff | tree | snapshot
2010-01-19 pschlosspat's mods to morisitahorn and pre.cluster commit | commitdiff | tree | snapshot
2010-01-19 westcottadded warning about average neighbor merges around... commit | commitdiff | tree | snapshot
2010-01-14 westcottadded formatmatrix, formatcolumn, and formatphylip... commit | commitdiff | tree | snapshot
2010-01-12 westcottworked on hcluster. made .single command run using... commit | commitdiff | tree | snapshot
2010-01-05 westcottyou can now use a distance matrix as input for the... commit | commitdiff | tree | snapshot
2010-01-04 westcottadded pca command commit | commitdiff | tree | snapshot
2009-12-23 westcottadded average and nearest neighbor methods to hcluster commit | commitdiff | tree | snapshot
2009-12-23 westcottprecluster command finished commit | commitdiff | tree | snapshot
2009-12-21 westcottfixed some bugs and added mgcluster command commit | commitdiff | tree | snapshot
2009-12-09 westcottadded sorted parameter to get.oturep, added error check... commit | commitdiff | tree | snapshot
2009-12-08 westcottadded list parameter to get.seqs and remove.seqs and... commit | commitdiff | tree | snapshot
2009-12-02 westcottmodified sequence class to read fasta files with commen... commit | commitdiff | tree | snapshot
2009-11-25 westcotta few changes to chimera classes commit | commitdiff | tree | snapshot
2009-11-25 pschlossversion for 10.5 commit | commitdiff | tree | snapshot
2009-11-24 westcottchanged get.sharedotu to get.sharedseqs commit | commitdiff | tree | snapshot
2009-11-24 pschlossfixed splash page citation commit | commitdiff | tree | snapshot
2009-11-24 westcottchanged get.sharedotu to get.sharedseqs commit | commitdiff | tree | snapshot
2009-11-24 westcottfixed bug in hcluster command commit | commitdiff | tree | snapshot
2009-11-23 westcottedited taxonomy equalizer to fix bug with windows commit | commitdiff | tree | snapshot
2009-11-23 westcottupdated phylotype command commit | commitdiff | tree | snapshot
2009-11-23 westcottchanged label outputs for phylotype command commit | commitdiff | tree | snapshot
2009-11-23 westcottadded phylotype command which reads a taxonomy file... commit | commitdiff | tree | snapshot
2009-11-19 westcottfixed bug in libshuff commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches