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biopieces.git
2011-12-07 martinahansenadded new biopeice remove_indel_columns commit | commitdiff | tree | snapshot
2011-12-07 martinahansenminor tweak to genbank.rb commit | commitdiff | tree | snapshot
2011-12-06 martinahansenfixed count bug in sff.rb commit | commitdiff | tree | snapshot
2011-12-06 martinahansenminor tweaks added to installer commit | commitdiff | tree | snapshot
2011-12-05 martinahansenupgraded mask_seq commit | commitdiff | tree | snapshot
2011-11-25 martinahansencleanup of usearch.rb commit | commitdiff | tree | snapshot
2011-11-25 martinahansenmoved usearch code to external file commit | commitdiff | tree | snapshot
2011-11-24 martinahansenremoved bp_doc/ and content commit | commitdiff | tree | snapshot
2011-11-24 martinahansenfixed regex in backtrack.rb commit | commitdiff | tree | snapshot
2011-11-23 martinahansenremoved stale unit tests from test_biopieces.rb commit | commitdiff | tree | snapshot
2011-11-23 martinahansenfixed glob unit test in test_biopieces.rb commit | commitdiff | tree | snapshot
2011-11-23 martinahansenremoved comma commit | commitdiff | tree | snapshot
2011-11-22 martinahansengot rid of nasty to_sym in biopieces.rb commit | commitdiff | tree | snapshot
2011-11-22 martinahansengot rid of nasty to_sym in biopieces.rb commit | commitdiff | tree | snapshot
2011-11-22 martinahansengot rid of type in filesys.rb commit | commitdiff | tree | snapshot
2011-11-22 martinahansenbeautifying backtrack.rb commit | commitdiff | tree | snapshot
2011-11-22 martinahansenslight cleanup of backtrack code commit | commitdiff | tree | snapshot
2011-11-21 martinahansenmade --rev defacto in useach_seq commit | commitdiff | tree | snapshot
2011-11-21 martinahansenupgraded usearch_seq commit | commitdiff | tree | snapshot
2011-11-21 martinahansenadded tests for uclust_seq commit | commitdiff | tree | snapshot
2011-11-19 martinahansenfixed bug in uniq_vals causing clusters named 0 to... commit | commitdiff | tree | snapshot
2011-11-18 martinahansenrewriting uclust_seq commit | commitdiff | tree | snapshot
2011-11-17 martinahansenfixed bug in grab commit | commitdiff | tree | snapshot
2011-11-17 martinahansenadded tests to remove_primers commit | commitdiff | tree | snapshot
2011-11-17 martinahansenfixed remove_primers commit | commitdiff | tree | snapshot
2011-11-17 martinahansenfixed bug in remove_primers commit | commitdiff | tree | snapshot
2011-11-17 martinahansenadded remove_primers biopiece commit | commitdiff | tree | snapshot
2011-11-17 martinahansenfixed stupid windows \r bug in Patscan::read_patterns commit | commitdiff | tree | snapshot
2011-11-17 martinahansenadded requirement of RubyInline commit | commitdiff | tree | snapshot
2011-11-17 martinahansenfixed ins/del reverse commit | commitdiff | tree | snapshot
2011-11-16 martinahansenfixed FLAG bug in sam.rb commit | commitdiff | tree | snapshot
2011-11-16 martinahansendisabled inline commit | commitdiff | tree | snapshot
2011-11-16 martinahansenfixed bug in backtrack.rb commit | commitdiff | tree | snapshot
2011-11-15 martinahansenfixed digest.rb commit | commitdiff | tree | snapshot
2011-11-15 martinahansenadded backtrack.rb commit | commitdiff | tree | snapshot
2011-11-15 martinahansenadded backtrack.rb commit | commitdiff | tree | snapshot
2011-11-14 martinahansenupgraded uclust_seq to work with useach 5.1.221 commit | commitdiff | tree | snapshot
2011-11-13 martinahansenadded backtrack.rb commit | commitdiff | tree | snapshot
2011-11-13 martinahansenfixed digest_seq commit | commitdiff | tree | snapshot
2011-11-13 martinahansencleaning up digest.rb commit | commitdiff | tree | snapshot
2011-11-09 martinahansenadded Backtrack.pm commit | commitdiff | tree | snapshot
2011-11-09 martinahansenfixed bug in seq.to_fasta commit | commitdiff | tree | snapshot
2011-11-09 martinahansenfixed bugs in installer commit | commitdiff | tree | snapshot
2011-11-08 martinahansenfixed bug in QA_454_report.rb commit | commitdiff | tree | snapshot
2011-11-07 martinahansenadded ruby version of read_sam commit | commitdiff | tree | snapshot
2011-11-07 martinahansenremoved perl version of read_sam commit | commitdiff | tree | snapshot
2011-11-02 martinahansenadded length check to bowtie_seq commit | commitdiff | tree | snapshot
2011-11-02 martinahansenadded length check to bowtie_seq commit | commitdiff | tree | snapshot
2011-11-02 martinahansenfixed qual argument for bowtie on fasta only commit | commitdiff | tree | snapshot
2011-11-01 martinahansenadded quality_trim to seq.rb along with unit tests commit | commitdiff | tree | snapshot
2011-11-01 martinahansenfixed unit tests for reverse and revcomp in seq.rb commit | commitdiff | tree | snapshot
2011-11-01 martinahansenfixed return on reverse_complement in seq.rb commit | commitdiff | tree | snapshot
2011-10-31 martinahansenadded metagenome flag to assemble_seq_idba commit | commitdiff | tree | snapshot
2011-10-28 martinahansenadded reversing of qual to reverse commit | commitdiff | tree | snapshot
2011-10-27 martinahansenremoved biopieces find_mids remove_mids read_solexa commit | commitdiff | tree | snapshot
2011-10-27 martinahansenadded QA_454_report ruby script commit | commitdiff | tree | snapshot
2011-10-25 martinahansenadded find_barcodes biopiece commit | commitdiff | tree | snapshot
2011-10-25 martinahansenadded png terminal to plot_histogram commit | commitdiff | tree | snapshot
2011-10-23 martinahansenupdated biopieces_installer - adding bash check commit | commitdiff | tree | snapshot
2011-10-22 martinahansenadded version number to biopieces_installer commit | commitdiff | tree | snapshot
2011-10-22 martinahansenadded more control to appending of .bashrc in biopieces... commit | commitdiff | tree | snapshot
2011-10-21 martinahansenadded shuffle! method to seq.rb commit | commitdiff | tree | snapshot
2011-10-20 martinahansenported trim_seq to ruby and added tests commit | commitdiff | tree | snapshot
2011-10-19 martinahansenupdated biopieces_installer.sh commit | commitdiff | tree | snapshot
2011-10-19 martinahansenrevoked to old working version of each_interval in... commit | commitdiff | tree | snapshot
2011-10-19 martinahansenworked on each_interval, but still too slow commit | commitdiff | tree | snapshot
2011-10-19 martinahansenspeed optimized interval_set and interval_unset in... commit | commitdiff | tree | snapshot
2011-10-18 martinahansenrewrote interval_set in bitarray.rb = 20 x faster commit | commitdiff | tree | snapshot
2011-10-18 martinahansenmemory optimization on bitarray.rb commit | commitdiff | tree | snapshot
2011-10-17 martinahansenadded more methods to bitarray.rb commit | commitdiff | tree | snapshot
2011-10-17 martinahansenadded methods to bitarray.rb commit | commitdiff | tree | snapshot
2011-10-17 martinahansenbitarray.rb bits_on method speedup x 3 commit | commitdiff | tree | snapshot
2011-10-17 martinahansencleanup of bitarray.rb commit | commitdiff | tree | snapshot
2011-10-17 martinahansenchanged bitwise operators in bitarray to inline commit | commitdiff | tree | snapshot
2011-10-17 martinahansenupgraded bitarray to work with narray for speed commit | commitdiff | tree | snapshot
2011-10-17 martinahansenadded comment to bitarray.rb commit | commitdiff | tree | snapshot
2011-10-14 martinahansenfixed biopieces installer commit | commitdiff | tree | snapshot
2011-10-14 martinahansenslight change to installer commit | commitdiff | tree | snapshot
2011-10-14 martinahansenadded biopieces installer commit | commitdiff | tree | snapshot
2011-10-14 martinahansenfixed critical missing uc bug in uniq_seq commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixed fastq issue commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixed last of fasta problems commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixed assemblers commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixing broken biopieces commit | commitdiff | tree | snapshot
2011-10-13 martinahansensmoothed ruby code to get rid of warnings commit | commitdiff | tree | snapshot
2011-10-13 martinahansenbeautifying fasta.rb commit | commitdiff | tree | snapshot
2011-10-13 martinahansenadded Class method Seq.new_bp to seq.rb commit | commitdiff | tree | snapshot
2011-10-13 martinahansenadded to_fastq method seq.rb commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadding tests for write_fastq_files commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded write_fastq_files commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded crufty puts method to fastq.rb commit | commitdiff | tree | snapshot
2011-10-12 martinahansenvariable rename commit | commitdiff | tree | snapshot
2011-10-12 martinahansenevil sort fix needed for assert_no_diff_dir commit | commitdiff | tree | snapshot
2011-10-12 martinahansenfixed .svn dir issue with assert_no_diff_dir commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded tests for write_fasta_files commit | commitdiff | tree | snapshot
2011-10-12 martinahansenfortified test.sh commit | commitdiff | tree | snapshot
2011-10-12 martinahansenfortified assert_no_diff_dir function commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded assert_no_diff_dir function to test code commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded biopieces write_fasta_files commit | commitdiff | tree | snapshot
2011-10-06 martinahansenfixed alignment descriptors in sam.rb commit | commitdiff | tree | snapshot
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