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biopieces.git
2010-08-03 martinahansenhad to fix shebang in testing env commit | commitdiff | tree | snapshot
2010-08-03 martinahansentesting suite paths upgraded commit | commitdiff | tree | snapshot
2010-08-03 martinahansenfixed first bug in testing suite commit | commitdiff | tree | snapshot
2010-08-03 martinahansenadded testing suite commit | commitdiff | tree | snapshot
2010-08-03 martinahansencorrected slight bug in grab commit | commitdiff | tree | snapshot
2010-06-30 martinahansenadded trim_seq commit | commitdiff | tree | snapshot
2010-06-29 martinahansenadded biopieces mean_scores commit | commitdiff | tree | snapshot
2010-06-28 martinahansenadded ID to SCORE alias in KISS.pm commit | commitdiff | tree | snapshot
2010-06-28 martinahansenadded usearch_seq biopiece commit | commitdiff | tree | snapshot
2010-06-26 martinahansencorrected typo commit | commitdiff | tree | snapshot
2010-06-22 martinahansenmessing with exit in ruby - still commit | commitdiff | tree | snapshot
2010-06-22 martinahansencorrected type in log messages commit | commitdiff | tree | snapshot
2010-06-21 martinahansenpolishing exit in ruby code commit | commitdiff | tree | snapshot
2010-06-17 martinahansenadded list switch to *_vals biopieces commit | commitdiff | tree | snapshot
2010-06-17 martinahansenadded list switch to mean_vals commit | commitdiff | tree | snapshot
2010-06-17 martinahansenadded fixedstep biopieces commit | commitdiff | tree | snapshot
2010-06-16 martinahansenschrubbing UCSC.pm code commit | commitdiff | tree | snapshot
2010-06-16 martinahansenfixed s/Common/Filesys/ renaming in UCSC.pm commit | commitdiff | tree | snapshot
2010-06-16 martinahansenruby code fixing exit commit | commitdiff | tree | snapshot
2010-06-16 martinahansenruby code fixing exit commit | commitdiff | tree | snapshot
2010-06-15 martinahansenruby code schrubbing commit | commitdiff | tree | snapshot
2010-06-14 martinahansenfixed unit tests for biopieces.rb commit | commitdiff | tree | snapshot
2010-05-28 martinahansentrouble with list of list and class Cast commit | commitdiff | tree | snapshot
2010-05-28 martinahansensplitting class Biopieces commit | commitdiff | tree | snapshot
2010-05-28 martinahansensplitting class Biopieces commit | commitdiff | tree | snapshot
2010-05-28 martinahansenupdating ruby code commit | commitdiff | tree | snapshot
2010-05-28 martinahansencleaned up ruby dir commit | commitdiff | tree | snapshot
2010-05-27 martinahansenruby unit tests refactored commit | commitdiff | tree | snapshot
2010-05-27 martinahansenupdated biopieces code commit | commitdiff | tree | snapshot
2010-05-25 martinahansenadded plot_scores fix commit | commitdiff | tree | snapshot
2010-05-25 martinahansenadded plot_scores commit | commitdiff | tree | snapshot
2010-05-20 martinahansenfixed missing SEQ_LEN in read_454 commit | commitdiff | tree | snapshot
2010-05-20 martinahansenadded solexa_str_mean to read_454 commit | commitdiff | tree | snapshot
2010-05-20 martinahansenadded bp_scripts directory and stats scripts commit | commitdiff | tree | snapshot
2010-05-19 martinahansenadded read_454 and write_454 (and ruby stuff) commit | commitdiff | tree | snapshot
2010-05-18 martinahansenextract seq now also extract SCORES if present commit | commitdiff | tree | snapshot
2010-05-18 martinahansenfixed harmless bug in remove_adaptor commit | commitdiff | tree | snapshot
2010-05-14 martinahansencleaning up ruby code dir commit | commitdiff | tree | snapshot
2010-05-11 martinahansenfixed bug in write_fixedstep commit | commitdiff | tree | snapshot
2010-04-27 martinahansenfixed speed issue with track_ruler in BGB commit | commitdiff | tree | snapshot
2010-04-26 martinahansenoptimized track_ruler in BGB commit | commitdiff | tree | snapshot
2010-04-20 martinahansenadded trimming of scores to remove_adaptor commit | commitdiff | tree | snapshot
2010-04-06 martinahansenfixing undef $clade bug in BGB commit | commitdiff | tree | snapshot
2010-03-31 martinahansendna page session export bug in BGB commit | commitdiff | tree | snapshot
2010-03-30 martinahansenfixed 0 defined bug in BGB commit | commitdiff | tree | snapshot
2010-03-22 martinahansenugly fix of BGB ladder problem commit | commitdiff | tree | snapshot
2010-03-22 martinahansenfixing ladder bug in BGB commit | commitdiff | tree | snapshot
2010-03-19 martinahansenadded PDF/SVG export to BGB commit | commitdiff | tree | snapshot
2010-03-19 martinahansenadded grid to BGB commit | commitdiff | tree | snapshot
2010-03-18 martinahansenadded collapsable tracks to BGB commit | commitdiff | tree | snapshot
2010-03-18 martinahansenBGB cleanup commit | commitdiff | tree | snapshot
2010-03-18 martinahansenerror handling and seq guess fix commit | commitdiff | tree | snapshot
2010-03-17 martinahansenremoved indexing from BGB_upload commit | commitdiff | tree | snapshot
2010-03-15 martinahansenadded N block switch to blat_seq commit | commitdiff | tree | snapshot
2010-03-14 martinahansenfixed minor BGB bug commit | commitdiff | tree | snapshot
2010-03-14 martinahansenfixed BGB issues terrible commit | commitdiff | tree | snapshot
2010-03-14 martinahansenadded persistent sessions to BGB commit | commitdiff | tree | snapshot
2010-03-13 martinahansenfixed login issue in BGB commit | commitdiff | tree | snapshot
2010-03-13 martinahansenchanged BGB session format to JSON commit | commitdiff | tree | snapshot
2010-03-13 martinahansenadded static link to BGB commit | commitdiff | tree | snapshot
2010-03-08 martinahansentweaks to blat_seq to avoid introns in fastMap - still... commit | commitdiff | tree | snapshot
2010-03-05 martinahansenlayout of wiggle improved commit | commitdiff | tree | snapshot
2010-03-05 martinahansenwiggle tracks display - almost there commit | commitdiff | tree | snapshot
2010-03-05 martinahansenfixing wiggle tracks in BGB commit | commitdiff | tree | snapshot
2010-03-04 martinahansenreworked list_inflate/deflate commit | commitdiff | tree | snapshot
2010-03-04 martinahansenchasing wiggle bug commit | commitdiff | tree | snapshot
2010-03-03 martinahansenfixed bug in list_deflate commit | commitdiff | tree | snapshot
2010-03-03 martinahansenfixed empty Q_ID val in BGB commit | commitdiff | tree | snapshot
2010-03-03 martinahansenadded find_gaps commit | commitdiff | tree | snapshot
2010-03-02 martinahansenfixed bug in Seq.pm commit | commitdiff | tree | snapshot
2010-03-02 martinahansencleaned up BGB track code commit | commitdiff | tree | snapshot
2010-03-02 martinahansenmerged BGB::Common.pm to BGB::Track.pm commit | commitdiff | tree | snapshot
2010-03-02 martinahansenBGB cleanup of index.cgi commit | commitdiff | tree | snapshot
2010-03-02 martinahansenBGB cleanup of hrefs commit | commitdiff | tree | snapshot
2010-03-01 martinahansenadded center navigation to BGB commit | commitdiff | tree | snapshot
2010-03-01 martinahansenadded wiggle to BGB commit | commitdiff | tree | snapshot
2010-03-01 martinahansenadded wiggle to BGB commit | commitdiff | tree | snapshot
2010-02-11 martinahansenfixed issue in KISS.pm but more found commit | commitdiff | tree | snapshot
2010-02-11 martinahansenadded option for database search to blat_seq commit | commitdiff | tree | snapshot
2010-02-10 martinahansenfixed feature width issue commit | commitdiff | tree | snapshot
2010-02-10 martinahansenadded arrows to BGB commit | commitdiff | tree | snapshot
2010-02-09 martinahansenadded color routine to Draw.pm commit | commitdiff | tree | snapshot
2010-02-09 martinahansenmoving back to binned index and using JSON for storing commit | commitdiff | tree | snapshot
2010-02-09 martinahansenchanged kiss score to bit_score instead of eval commit | commitdiff | tree | snapshot
2010-02-06 martinahansenadded search function to NClist.pm commit | commitdiff | tree | snapshot
2010-02-06 martinahansenfixed BGB search function commit | commitdiff | tree | snapshot
2010-02-06 martinahansendebugging search function in NClists.pm commit | commitdiff | tree | snapshot
2010-02-06 martinahansenadded search function to NClist.pm commit | commitdiff | tree | snapshot
2010-02-06 martinahansenremoved dir check from create_bowtie_index commit | commitdiff | tree | snapshot
2010-02-06 martinahansenshifted to NC list in BGB commit | commitdiff | tree | snapshot
2010-02-06 martinahansenadded uniq_seq commit | commitdiff | tree | snapshot
2010-02-06 martinahansenfix of read_kiss code comments commit | commitdiff | tree | snapshot
2010-02-05 martinahansenfixed bugs in BGB commit | commitdiff | tree | snapshot
2010-02-03 martinahansenadded NClist.pm commit | commitdiff | tree | snapshot
2010-01-31 martinahansenfixed sequence type guessing in create_blast_index commit | commitdiff | tree | snapshot
2010-01-29 martinahansenchanged sorting in BGB commit | commitdiff | tree | snapshot
2010-01-28 martinahansenrepair on plot_karyogram commit | commitdiff | tree | snapshot
2010-01-28 martinahansenrepair on plot_karyogram commit | commitdiff | tree | snapshot
2010-01-26 martinahansenfixed a number of issues - grave bug in complement_seq! commit | commitdiff | tree | snapshot
2010-01-25 martinahansenadd q_id specificity to assemblo_contigs commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/