git.donarmstrong.com Git - mothur.git/shortlog

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2011-04-06	westcott	removed read.dist, read.otu, read.tree and globaldata...	commit \| commitdiff \| tree \| snapshot
2011-04-04	westcott	sped up the remove.seqs and remove.lineage and get...	commit \| commitdiff \| tree \| snapshot
2011-03-30	westcott	fixed problem with sffinfo that caused a file mismatch...	commit \| commitdiff \| tree \| snapshot
2011-03-30	pschloss	made dups=T default in get.seqs	commit \| commitdiff \| tree \| snapshot
2011-03-29	pschloss	removed some of the warning output from chimera.slayer	commit \| commitdiff \| tree \| snapshot
2011-03-23	pschloss	small mod to chimerarefseq.cpp	commit \| commitdiff \| tree \| snapshot
2011-03-22	westcott	fixed trim.seqs group counts by adding back in the...	commit \| commitdiff \| tree \| snapshot
2011-03-22	westcott	working on pca	commit \| commitdiff \| tree \| snapshot
2011-03-22	westcott	working on pca	commit \| commitdiff \| tree \| snapshot
2011-03-22	westcott	fixed clearcut version bug, added group count output...	commit \| commitdiff \| tree \| snapshot
2011-03-22	westcott	fixed clearcut version bug, added group count output...	commit \| commitdiff \| tree \| snapshot
2011-03-21	pschloss	random chagnes from pat	commit \| commitdiff \| tree \| snapshot
2011-03-21	westcott	fixed get.lienage and remove.lineage bug with confidenc...	commit \| commitdiff \| tree \| snapshot
2011-03-16	westcott	fixed catchall "clunky" names	commit \| commitdiff \| tree \| snapshot
2011-03-16	westcott	fixed the bug that caused mothur to choke on other...	commit \| commitdiff \| tree \| snapshot
2011-03-16	westcott	added set.current and get.current commands and modified...	commit \| commitdiff \| tree \| snapshot
2011-03-15	westcott	adding current file class	commit \| commitdiff \| tree \| snapshot
2011-03-15	westcott	adding current file class	commit \| commitdiff \| tree \| snapshot
2011-03-11	westcott	sped up align.seqs appending of files	commit \| commitdiff \| tree \| snapshot
2011-03-11	pschloss	some more mods to shh.seqs	commit \| commitdiff \| tree \| snapshot
2011-03-11	westcott	added summary outputs for align.check	commit \| commitdiff \| tree \| snapshot
2011-03-11	westcott	added namefile to align.check and added seqs from namef...	commit \| commitdiff \| tree \| snapshot
2011-03-11	westcott	added namefile to summary.seqs	commit \| commitdiff \| tree \| snapshot
2011-03-11	pschloss	some changes to trim.flows	commit \| commitdiff \| tree \| snapshot
2011-03-07	pschloss	removed some couts from qualityscores.cpp	commit \| commitdiff \| tree \| snapshot
2011-03-07	pschloss	fix trim.seqs / qualscores bug	commit \| commitdiff \| tree \| snapshot
2011-03-07	westcott	trim.seqs fix	commit \| commitdiff \| tree \| snapshot
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfi...	commit \| commitdiff \| tree \| snapshot
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfi...	commit \| commitdiff \| tree \| snapshot
2011-03-04	westcott	bug fixes	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	fixed bug in seqerrorcommand	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	took out couts	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	modified reportfile class	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	modified seqerror and qualscores	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	modified seqerror and qualscores	commit \| commitdiff \| tree \| snapshot
2011-02-28	westcott	fixed unweighted command	commit \| commitdiff \| tree \| snapshot
2011-02-26	pschloss	some minor changes	commit \| commitdiff \| tree \| snapshot
2011-02-25	westcott	changed version and release date	commit \| commitdiff \| tree \| snapshot
2011-02-25	westcott	added root parameter to the unifrac commands so you...	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	commit \| commitdiff \| tree \| snapshot
2011-02-21	pschloss	reworked amova / homova / anosim	commit \| commitdiff \| tree \| snapshot
2011-02-18	westcott	fixed unifrac bug with multiple processors if numComps...	commit \| commitdiff \| tree \| snapshot
2011-02-18	pschloss	mods to amova command	commit \| commitdiff \| tree \| snapshot
2011-02-16	pschloss	bug fix to seq.error	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	finished anosim command	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	fixed an mpi bug in shhh.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	working on anosim command	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	took cout's from shhh.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	fixed bugg in shhh.seqs command	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	finished the chimera.slayer split function	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	fixed mpi version compile issue with chimera.slayer	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	mods to shhh.seqs command	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	mods to seq.errror	commit \| commitdiff \| tree \| snapshot
2011-02-14	westcott	added make.fastq command	commit \| commitdiff \| tree \| snapshot
2011-02-14	westcott	fixed catchall PATH variable bug added trimera to chime...	commit \| commitdiff \| tree \| snapshot
2011-02-14	pschloss	* empty log message *	commit \| commitdiff \| tree \| snapshot
2011-02-11	pschloss	mod to seq.error to allow for degenerate bases in the...	commit \| commitdiff \| tree \| snapshot
2011-02-11	pschloss	shhh.seqs and trim.flows modifications.	commit \| commitdiff \| tree \| snapshot
2011-02-10	pschloss	modified reverse.seqs and qualscores.cpp	commit \| commitdiff \| tree \| snapshot
2011-02-09	pschloss	mods to trim.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-09	pschloss	mods to trim.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-09	westcott	added mantel command	commit \| commitdiff \| tree \| snapshot
2011-02-09	westcott	added mantel command	commit \| commitdiff \| tree \| snapshot
2011-02-09	pschloss	mods to shhhercommand and seqerrorcommand	commit \| commitdiff \| tree \| snapshot
2011-02-08	pschloss	changes to trim.flows command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added [ERROR] flag if command aborts	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	fixed homova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added homova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added homova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree \| snapshot
2011-02-07	westcott	adding license	commit \| commitdiff \| tree \| snapshot
2011-02-04	westcott	fixed kendall method in corr.axes	commit \| commitdiff \| tree \| snapshot
2011-02-04	westcott	working on kendall	commit \| commitdiff \| tree \| snapshot
2011-02-04	pschloss	removed trimera checking from refchimeratest	commit \| commitdiff \| tree \| snapshot
2011-02-04	westcott	fixed catchall hangup if it can't find the exe	commit \| commitdiff \| tree \| snapshot
2011-02-03	westcott	corr.axes spearman	commit \| commitdiff \| tree \| snapshot
2011-02-03	westcott	changes for 1.16.0	commit \| commitdiff \| tree \| snapshot
2011-02-03	pschloss	true chimera testing using reference sequences	commit \| commitdiff \| tree \| snapshot
2011-02-03	pschloss	* empty log message *	commit \| commitdiff \| tree \| snapshot
2011-01-26	westcott	fixed mempearson and structpearson	commit \| commitdiff \| tree \| snapshot
2011-01-26	westcott	mods in testing 1.16.0	commit \| commitdiff \| tree \| snapshot
2011-01-25	westcott	mods for 1.16	commit \| commitdiff \| tree \| snapshot
2011-01-24	westcott	added merge.groups command	commit \| commitdiff \| tree \| snapshot
2011-01-24	westcott	added zscore method to normalize.shared	commit \| commitdiff \| tree \| snapshot
2011-01-24	westcott	remove.rare command	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	modified shhhercommand to make buildable with windows	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	added calcs to tree.shared. working on remove.rare...	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	added diffs and percent parameters to cluster.fragments...	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	nmds command done	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	working on nmds	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	working on nmds	commit \| commitdiff \| tree \| snapshot
2011-01-19	westcott	working on nmds command	commit \| commitdiff \| tree \| snapshot
2011-01-19	westcott	working on nmds command	commit \| commitdiff \| tree \| snapshot
2011-01-14	westcott	fixed trim.seqs bug with qtrim parameter and added...	commit \| commitdiff \| tree \| snapshot
2011-01-10	westcott	pca command	commit \| commitdiff \| tree \| snapshot
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