git.donarmstrong.com Git - mothur.git/shortlog

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2009-12-23	westcott	precluster command finished	commit \| commitdiff \| tree \| snapshot
2009-12-21	westcott	fixed some bugs and added mgcluster command	commit \| commitdiff \| tree \| snapshot
2009-12-09	westcott	added sorted parameter to get.oturep, added error check...	commit \| commitdiff \| tree \| snapshot
2009-12-08	westcott	added list parameter to get.seqs and remove.seqs and...	commit \| commitdiff \| tree \| snapshot
2009-12-02	westcott	modified sequence class to read fasta files with commen...	commit \| commitdiff \| tree \| snapshot
2009-11-25	westcott	a few changes to chimera classes	commit \| commitdiff \| tree \| snapshot
2009-11-25	pschloss	version for 10.5	commit \| commitdiff \| tree \| snapshot
2009-11-24	westcott	changed get.sharedotu to get.sharedseqs	commit \| commitdiff \| tree \| snapshot
2009-11-24	pschloss	fixed splash page citation	commit \| commitdiff \| tree \| snapshot
2009-11-24	westcott	changed get.sharedotu to get.sharedseqs	commit \| commitdiff \| tree \| snapshot
2009-11-24	westcott	fixed bug in hcluster command	commit \| commitdiff \| tree \| snapshot
2009-11-23	westcott	edited taxonomy equalizer to fix bug with windows	commit \| commitdiff \| tree \| snapshot
2009-11-23	westcott	updated phylotype command	commit \| commitdiff \| tree \| snapshot
2009-11-23	westcott	changed label outputs for phylotype command	commit \| commitdiff \| tree \| snapshot
2009-11-23	westcott	added phylotype command which reads a taxonomy file...	commit \| commitdiff \| tree \| snapshot
2009-11-19	westcott	fixed bug in libshuff	commit \| commitdiff \| tree \| snapshot
2009-11-17	westcott	final fixes for 1.7	commit \| commitdiff \| tree \| snapshot
2009-11-13	westcott	finished work on classify.seqs bayesian method and...	commit \| commitdiff \| tree \| snapshot
2009-11-05	westcott	started work on classify.seqs command. changed the...	commit \| commitdiff \| tree \| snapshot
2009-11-02	westcott	added groups option to read.otu, added qtrim option...	commit \| commitdiff \| tree \| snapshot
2009-10-29	westcott	fixed bug with hcluster	commit \| commitdiff \| tree \| snapshot
2009-10-29	westcott	added hcluster command and fixed some bugs, namely...	commit \| commitdiff \| tree \| snapshot
2009-10-12	westcott	finished chimeraslayer method and added get.listcount...	commit \| commitdiff \| tree \| snapshot
2009-09-29	westcott	working on chimeraslayer and found bug in shared command.	commit \| commitdiff \| tree \| snapshot
2009-09-28	westcott	started adding chimeraslayer method and fixed minor...	commit \| commitdiff \| tree \| snapshot
2009-09-23	westcott	added get.sharedotu command	commit \| commitdiff \| tree \| snapshot
2009-09-22	westcott	removed line option	commit \| commitdiff \| tree \| snapshot
2009-09-21	westcott	align.check command added	commit \| commitdiff \| tree \| snapshot
2009-09-18	westcott	adding more error checking for list and group files...	commit \| commitdiff \| tree \| snapshot
2009-09-18	westcott	removing extra file output from pintail	commit \| commitdiff \| tree \| snapshot
2009-09-17	westcott	added check for blank files in openInputFile, add check...	commit \| commitdiff \| tree \| snapshot
2009-09-15	westcott	fixed some issues while testing 1.6	commit \| commitdiff \| tree \| snapshot
2009-09-14	westcott	added help to chimera.seqs	commit \| commitdiff \| tree \| snapshot
2009-09-11	westcott	chimeracheck method added	commit \| commitdiff \| tree \| snapshot
2009-09-09	westcott	continued work on chimeras and fixed bug in trim.seqs...	commit \| commitdiff \| tree \| snapshot
2009-09-08	westcott	finished with ccode, returned bellerophon to last save...	commit \| commitdiff \| tree \| snapshot
2009-09-04	westcott	changed reporting in ccode to only report those who...	commit \| commitdiff \| tree \| snapshot
2009-09-04	westcott	ccode working - still need to paralellize	commit \| commitdiff \| tree \| snapshot
2009-09-02	westcott	updated pats contact and mothur header info	commit \| commitdiff \| tree \| snapshot
2009-09-01	westcott	changed raredisplay to use vectors instead of files	commit \| commitdiff \| tree \| snapshot
2009-09-01	westcott	added more descriptive error messages to sharedlist	commit \| commitdiff \| tree \| snapshot
2009-08-31	westcott	checking in chimera files in progress after move to...	commit \| commitdiff \| tree \| snapshot
2009-08-13	westcott	last changes before move	commit \| commitdiff \| tree \| snapshot
2009-08-13	westcott	last changes before move	commit \| commitdiff \| tree \| snapshot
2009-08-12	westcott	removing mallard	commit \| commitdiff \| tree \| snapshot
2009-08-11	westcott	chimera.seqs pintail is working.	commit \| commitdiff \| tree \| snapshot
2009-08-10	pschloss	mothur-v.1.5.0	commit \| commitdiff \| tree \| snapshot
2009-08-06	westcott	This is 1.5.	commit \| commitdiff \| tree \| snapshot
2009-08-06	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-05	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-05	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-03	westcott	bugs for 1.5	commit \| commitdiff \| tree \| snapshot
2009-08-03	westcott	bugs for 1.5	commit \| commitdiff \| tree \| snapshot
2009-08-02	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-08-01	westcott	bugs fixes while testing for 1.5 release	commit \| commitdiff \| tree \| snapshot
2009-07-30	westcott	working on chimeras	commit \| commitdiff \| tree \| snapshot
2009-07-30	pschloss	pat's changes after generating wiki pages for 1.5	commit \| commitdiff \| tree \| snapshot
2009-07-30	westcott	Thallinger changes to cluster command.	commit \| commitdiff \| tree \| snapshot
2009-07-30	pschloss	pat's edits prior to v.1.5	commit \| commitdiff \| tree \| snapshot
2009-07-28	westcott	working on chimeras	commit \| commitdiff \| tree \| snapshot
2009-07-26	westcott	fixed bug with aligner in database class, worked on...	commit \| commitdiff \| tree \| snapshot
2009-07-22	westcott	worked on chimeras	commit \| commitdiff \| tree \| snapshot
2009-07-22	westcott	changed sequence class so that when constructor is...	commit \| commitdiff \| tree \| snapshot
2009-07-20	westcott	fixed bugs in venn and aligner	commit \| commitdiff \| tree \| snapshot
2009-07-14	westcott	* empty log message *	commit \| commitdiff \| tree \| snapshot
2009-07-10	westcott	added sorted option to get.rabund command	commit \| commitdiff \| tree \| snapshot
2009-07-09	westcott	added getline function to mothur and modified places...	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added stricter compilation requirements and fixed resul...	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added system command	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added remove.seqs command	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added get.seqs command	commit \| commitdiff \| tree \| snapshot
2009-07-08	westcott	added list.seqs command	commit \| commitdiff \| tree \| snapshot
2009-07-06	westcott	fixed bug in sequencedb read for windows users and...	commit \| commitdiff \| tree \| snapshot
2009-07-02	westcott	made changes to concensus to find a better tree. also...	commit \| commitdiff \| tree \| snapshot
2009-06-29	westcott	fixed misspelling on consensus	commit \| commitdiff \| tree \| snapshot
2009-06-29	westcott	fixed bug in bootstrap command that was caused by globa...	commit \| commitdiff \| tree \| snapshot
2009-06-29	westcott	modified read.otu and shared command	commit \| commitdiff \| tree \| snapshot
2009-06-25	westcott	added logfile feature	commit \| commitdiff \| tree \| snapshot
2009-06-23	pschloss	mothur v.1.4.1	commit \| commitdiff \| tree \| snapshot
2009-06-23	westcott	changed how we do "smart" distancing	commit \| commitdiff \| tree \| snapshot
2009-06-22	westcott	worked on parselist and shared commands, removing memor...	commit \| commitdiff \| tree \| snapshot
2009-06-21	pschloss	This is v.1.4.0	commit \| commitdiff \| tree \| snapshot
2009-06-19	westcott	version 1.4	commit \| commitdiff \| tree \| snapshot
2009-06-19	westcott	version working on mac with .tellg changed to unget...	commit \| commitdiff \| tree \| snapshot
2009-06-18	westcott	fixed some bugs	commit \| commitdiff \| tree \| snapshot
2009-06-18	pschloss	added an alignreport option to screen seqs	commit \| commitdiff \| tree \| snapshot
2009-06-16	pschloss	a few minor things - pds	commit \| commitdiff \| tree \| snapshot
2009-06-16	westcott	fixed some bugs and added scriptengine	commit \| commitdiff \| tree \| snapshot
2009-06-15	westcott	fixing minor bugs	commit \| commitdiff \| tree \| snapshot
2009-06-15	westcott	removed validcommands and put its checking in commandfa...	commit \| commitdiff \| tree \| snapshot
2009-06-14	pschloss	merged pat's trim seqs edits with sarah's major overhau...	commit \| commitdiff \| tree \| snapshot
2009-06-12	westcott	broke up globaldata and moved error checking and help...	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	got rid of extra temp files in dist.seqs	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	added help for heatmap.sim	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	added heatmap.sim command and changed heatmap to heatma...	commit \| commitdiff \| tree \| snapshot
2009-06-08	pschloss	fixed how seq.dists divides the matrix for multiple...	commit \| commitdiff \| tree \| snapshot
2009-06-08	pschloss	added some features to trim.seqs	commit \| commitdiff \| tree \| snapshot
2009-06-08	westcott	dist.seqs can now use n processors, and only outputs...	commit \| commitdiff \| tree \| snapshot
2009-06-07	pschloss	modified trim.seqs command	commit \| commitdiff \| tree \| snapshot
2009-06-06	pschloss	added trim.seqs command	commit \| commitdiff \| tree \| snapshot
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