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mothur.git
2009-12-23 westcottprecluster command finished commit | commitdiff | tree | snapshot
2009-12-21 westcottfixed some bugs and added mgcluster command commit | commitdiff | tree | snapshot
2009-12-09 westcottadded sorted parameter to get.oturep, added error check... commit | commitdiff | tree | snapshot
2009-12-08 westcottadded list parameter to get.seqs and remove.seqs and... commit | commitdiff | tree | snapshot
2009-12-02 westcottmodified sequence class to read fasta files with commen... commit | commitdiff | tree | snapshot
2009-11-25 westcotta few changes to chimera classes commit | commitdiff | tree | snapshot
2009-11-25 pschlossversion for 10.5 commit | commitdiff | tree | snapshot
2009-11-24 westcottchanged get.sharedotu to get.sharedseqs commit | commitdiff | tree | snapshot
2009-11-24 pschlossfixed splash page citation commit | commitdiff | tree | snapshot
2009-11-24 westcottchanged get.sharedotu to get.sharedseqs commit | commitdiff | tree | snapshot
2009-11-24 westcottfixed bug in hcluster command commit | commitdiff | tree | snapshot
2009-11-23 westcottedited taxonomy equalizer to fix bug with windows commit | commitdiff | tree | snapshot
2009-11-23 westcottupdated phylotype command commit | commitdiff | tree | snapshot
2009-11-23 westcottchanged label outputs for phylotype command commit | commitdiff | tree | snapshot
2009-11-23 westcottadded phylotype command which reads a taxonomy file... commit | commitdiff | tree | snapshot
2009-11-19 westcottfixed bug in libshuff commit | commitdiff | tree | snapshot
2009-11-17 westcottfinal fixes for 1.7 commit | commitdiff | tree | snapshot
2009-11-13 westcottfinished work on classify.seqs bayesian method and... commit | commitdiff | tree | snapshot
2009-11-05 westcottstarted work on classify.seqs command. changed the... commit | commitdiff | tree | snapshot
2009-11-02 westcottadded groups option to read.otu, added qtrim option... commit | commitdiff | tree | snapshot
2009-10-29 westcottfixed bug with hcluster commit | commitdiff | tree | snapshot
2009-10-29 westcottadded hcluster command and fixed some bugs, namely... commit | commitdiff | tree | snapshot
2009-10-12 westcottfinished chimeraslayer method and added get.listcount... commit | commitdiff | tree | snapshot
2009-09-29 westcottworking on chimeraslayer and found bug in shared command. commit | commitdiff | tree | snapshot
2009-09-28 westcottstarted adding chimeraslayer method and fixed minor... commit | commitdiff | tree | snapshot
2009-09-23 westcottadded get.sharedotu command commit | commitdiff | tree | snapshot
2009-09-22 westcottremoved line option commit | commitdiff | tree | snapshot
2009-09-21 westcottalign.check command added commit | commitdiff | tree | snapshot
2009-09-18 westcottadding more error checking for list and group files... commit | commitdiff | tree | snapshot
2009-09-18 westcottremoving extra file output from pintail commit | commitdiff | tree | snapshot
2009-09-17 westcottadded check for blank files in openInputFile, add check... commit | commitdiff | tree | snapshot
2009-09-15 westcottfixed some issues while testing 1.6 commit | commitdiff | tree | snapshot
2009-09-14 westcottadded help to chimera.seqs commit | commitdiff | tree | snapshot
2009-09-11 westcottchimeracheck method added commit | commitdiff | tree | snapshot
2009-09-09 westcottcontinued work on chimeras and fixed bug in trim.seqs... commit | commitdiff | tree | snapshot
2009-09-08 westcottfinished with ccode, returned bellerophon to last save... commit | commitdiff | tree | snapshot
2009-09-04 westcottchanged reporting in ccode to only report those who... commit | commitdiff | tree | snapshot
2009-09-04 westcottccode working - still need to paralellize commit | commitdiff | tree | snapshot
2009-09-02 westcottupdated pats contact and mothur header info commit | commitdiff | tree | snapshot
2009-09-01 westcottchanged raredisplay to use vectors instead of files commit | commitdiff | tree | snapshot
2009-09-01 westcottadded more descriptive error messages to sharedlist commit | commitdiff | tree | snapshot
2009-08-31 westcottchecking in chimera files in progress after move to... commit | commitdiff | tree | snapshot
2009-08-13 westcottlast changes before move commit | commitdiff | tree | snapshot
2009-08-13 westcottlast changes before move commit | commitdiff | tree | snapshot
2009-08-12 westcottremoving mallard commit | commitdiff | tree | snapshot
2009-08-11 westcottchimera.seqs pintail is working. commit | commitdiff | tree | snapshot
2009-08-10 pschlossmothur-v.1.5.0 commit | commitdiff | tree | snapshot
2009-08-06 westcottThis is 1.5. commit | commitdiff | tree | snapshot
2009-08-06 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-05 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-05 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-03 westcottbugs for 1.5 commit | commitdiff | tree | snapshot
2009-08-03 westcottbugs for 1.5 commit | commitdiff | tree | snapshot
2009-08-02 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-01 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-07-30 westcottworking on chimeras commit | commitdiff | tree | snapshot
2009-07-30 pschlosspat's changes after generating wiki pages for 1.5 commit | commitdiff | tree | snapshot
2009-07-30 westcottThallinger changes to cluster command. commit | commitdiff | tree | snapshot
2009-07-30 pschlosspat's edits prior to v.1.5 commit | commitdiff | tree | snapshot
2009-07-28 westcottworking on chimeras commit | commitdiff | tree | snapshot
2009-07-26 westcottfixed bug with aligner in database class, worked on... commit | commitdiff | tree | snapshot
2009-07-22 westcottworked on chimeras commit | commitdiff | tree | snapshot
2009-07-22 westcottchanged sequence class so that when constructor is... commit | commitdiff | tree | snapshot
2009-07-20 westcottfixed bugs in venn and aligner commit | commitdiff | tree | snapshot
2009-07-14 westcott*** empty log message *** commit | commitdiff | tree | snapshot
2009-07-10 westcottadded sorted option to get.rabund command commit | commitdiff | tree | snapshot
2009-07-09 westcottadded getline function to mothur and modified places... commit | commitdiff | tree | snapshot
2009-07-08 westcottadded stricter compilation requirements and fixed resul... commit | commitdiff | tree | snapshot
2009-07-08 westcottadded system command commit | commitdiff | tree | snapshot
2009-07-08 westcottadded remove.seqs command commit | commitdiff | tree | snapshot
2009-07-08 westcottadded get.seqs command commit | commitdiff | tree | snapshot
2009-07-08 westcottadded list.seqs command commit | commitdiff | tree | snapshot
2009-07-06 westcottfixed bug in sequencedb read for windows users and... commit | commitdiff | tree | snapshot
2009-07-02 westcottmade changes to concensus to find a better tree. also... commit | commitdiff | tree | snapshot
2009-06-29 westcottfixed misspelling on consensus commit | commitdiff | tree | snapshot
2009-06-29 westcottfixed bug in bootstrap command that was caused by globa... commit | commitdiff | tree | snapshot
2009-06-29 westcottmodified read.otu and shared command commit | commitdiff | tree | snapshot
2009-06-25 westcottadded logfile feature commit | commitdiff | tree | snapshot
2009-06-23 pschlossmothur v.1.4.1 commit | commitdiff | tree | snapshot
2009-06-23 westcottchanged how we do "smart" distancing commit | commitdiff | tree | snapshot
2009-06-22 westcottworked on parselist and shared commands, removing memor... commit | commitdiff | tree | snapshot
2009-06-21 pschlossThis is v.1.4.0 commit | commitdiff | tree | snapshot
2009-06-19 westcottversion 1.4 commit | commitdiff | tree | snapshot
2009-06-19 westcottversion working on mac with .tellg changed to unget... commit | commitdiff | tree | snapshot
2009-06-18 westcottfixed some bugs commit | commitdiff | tree | snapshot
2009-06-18 pschlossadded an alignreport option to screen seqs commit | commitdiff | tree | snapshot
2009-06-16 pschlossa few minor things - pds commit | commitdiff | tree | snapshot
2009-06-16 westcottfixed some bugs and added scriptengine commit | commitdiff | tree | snapshot
2009-06-15 westcottfixing minor bugs commit | commitdiff | tree | snapshot
2009-06-15 westcottremoved validcommands and put its checking in commandfa... commit | commitdiff | tree | snapshot
2009-06-14 pschlossmerged pat's trim seqs edits with sarah's major overhau... commit | commitdiff | tree | snapshot
2009-06-12 westcottbroke up globaldata and moved error checking and help... commit | commitdiff | tree | snapshot
2009-06-08 westcottgot rid of extra temp files in dist.seqs commit | commitdiff | tree | snapshot
2009-06-08 westcottadded help for heatmap.sim commit | commitdiff | tree | snapshot
2009-06-08 westcottadded heatmap.sim command and changed heatmap to heatma... commit | commitdiff | tree | snapshot
2009-06-08 pschlossfixed how seq.dists divides the matrix for multiple... commit | commitdiff | tree | snapshot
2009-06-08 pschlossadded some features to trim.seqs commit | commitdiff | tree | snapshot
2009-06-08 westcottdist.seqs can now use n processors, and only outputs... commit | commitdiff | tree | snapshot
2009-06-07 pschlossmodified trim.seqs command commit | commitdiff | tree | snapshot
2009-06-06 pschlossadded trim.seqs command commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches