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biopieces.git
2011-06-08
martinahansen
added tests for complement_seq
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2011-06-06
martinahansen
fixed cat_seq
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2011-06-06
martinahansen
added cat_seq biopiece
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2011-06-05
martinahansen
shortened messages in test suite
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2011-06-05
martinahansen
added tests for uniq_vals
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2011-06-05
martinahansen
added tests for sort_records
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2011-06-04
martinahansen
added tests for transliterate_vals
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2011-06-04
martinahansen
added tests for transliterate_seq
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2011-06-03
martinahansen
added tests for length_vals
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2011-06-03
martinahansen
added test for calc_bit_scores
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2011-05-31
martinahansen
added assemble_seq_ray
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2011-05-30
martinahansen
upgraded mean_scores
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2011-05-30
martinahansen
rename switch to something more appropriate
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2011-05-30
martinahansen
removed unused code from find_adaptor
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2011-05-30
martinahansen
added perl module and ruby gem test to bp_test
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2011-05-29
martinahansen
squashing bugs in find_adaptor
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2011-05-29
martinahansen
working on find_adaptor
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2011-05-28
martinahansen
added multithreading to find_adaptor
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2011-05-28
martinahansen
added multithreading to find_adaptor
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2011-05-26
martinahansen
added order_pairs
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2011-05-26
martinahansen
fixed type in assemble_seq_idba
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2011-05-26
martinahansen
fixed mate-pair name issue in assemble_seq_idba
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2011-05-25
martinahansen
added plot_distribution biopiece
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2011-05-25
martinahansen
polished plot_scores
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2011-05-24
martinahansen
upgraded bp_update alias due to complaints
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2011-05-24
martinahansen
fixed fence post bug in plot_lendist
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2011-05-24
martinahansen
working on clean_reads scripts
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2011-05-24
martinahansen
working on clean_reads scripts
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2011-05-24
martinahansen
fixed strange bug in find_adaptor
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2011-05-24
martinahansen
fixed asseble_seq_velvet
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2011-05-24
martinahansen
fixed asseble_seq_idba
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2011-05-24
martinahansen
polished bp_scripts
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2011-05-23
martinahansen
fixed find_adaptor tests
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2011-05-23
martinahansen
polishing find_adaptor
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2011-05-23
martinahansen
fixed critical flaw in find_adaptor
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2011-05-23
martinahansen
fixed critical bug in biopieces.rb and reworked find_ad...
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2011-05-23
martinahansen
committing major ruby overhaul
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2011-05-19
martinahansen
fiddleling with biopieces.rb
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2011-05-19
martinahansen
preparing biopieces.rb rewrite
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2011-05-18
martinahansen
fixed a path in biopieces.rb
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2011-05-18
martinahansen
fixed paths in assemble_seq_idba + velvet
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2011-05-18
martinahansen
refactored patternmatcher
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2011-05-13
martinahansen
updated 00README file in ruby dir
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2011-05-13
martinahansen
cleaning up old ruby trunk
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2011-05-13
martinahansen
changed layout of ruby source
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2011-05-13
martinahansen
add dist option to find_adaptor
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2011-05-12
martinahansen
upgraded add_ident tests
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2011-05-12
martinahansen
added offset switch to add_ident
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2011-05-11
martinahansen
1 vector only patternmatcher.rb now :o)
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2011-05-10
martinahansen
fixed pipes for adaptor removal
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2011-05-10
martinahansen
added fix for negative 454 decimal values
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2011-05-10
martinahansen
fixed type cast bug
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2011-05-10
martinahansen
added procedure switch to analyze_assembly
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2011-05-10
martinahansen
added procedure switch to find_genes
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2011-05-10
martinahansen
polished analyze_assembly
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2011-05-09
martinahansen
polishing gene cov feature in analyze_assembly
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2011-05-09
martinahansen
added gene coverage to analyze_assembly
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2011-05-09
martinahansen
added coverage method to prodigal.rb
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2011-05-09
martinahansen
added fix to find_genes
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2011-05-09
martinahansen
ported find_genes to ruby
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2011-05-09
martinahansen
fixed indentation in uclust_seq
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2011-05-09
martinahansen
added prodigal.rb
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2011-05-09
martinahansen
updated genbank.rb to allow empty defaults
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2011-05-06
martinahansen
added full switch to find_genes
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2011-05-06
martinahansen
removing sequence file from assemble_seq*
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2011-05-05
martinahansen
polished asseble_seq_velvet
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2011-05-05
martinahansen
removed name option from asseble_seq_idba
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2011-05-04
martinahansen
added assemble_seq_velvet draft biopiece
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2011-05-04
martinahansen
fixed default cast for lists in biopieces.rb
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2011-05-04
martinahansen
refactoring arg name in assemble_seq_idba
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2011-05-04
martinahansen
added --clean to assemble_seq_idba
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2011-05-03
martinahansen
polished assemble_seq_idba
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2011-05-03
martinahansen
added assemble_seq_idba
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2011-05-03
martinahansen
made plot_scores 1-based
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2011-05-03
martinahansen
corrected plot_matches missing -persists switch
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2011-05-03
martinahansen
added titles to plot_scores
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2011-05-02
martinahansen
fixed typo in analyce_gc
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2011-05-02
martinahansen
code update
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2011-05-02
martinahansen
ported plot_scores to ruby
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2011-05-02
martinahansen
removed redundant line from plot_scores
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2011-05-02
martinahansen
testing unspecified features
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2011-05-02
martinahansen
added tests to analyze_gc
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2011-04-26
martinahansen
adaptor script posilished
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2011-04-26
martinahansen
added useful biopiece scripts
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2011-04-19
martinahansen
fixed bit fields in pattern matcher
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2011-04-19
martinahansen
polishing find_adaptor
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2011-04-19
martinahansen
added cache option to find_adaptor
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2011-04-19
martinahansen
added cache option to find_adaptor
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2011-04-18
martinahansen
added clip_adaptor biopiece
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2011-04-18
martinahansen
added clip_adaptor biopiece
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2011-04-18
martinahansen
added tests for find_adaptor
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2011-04-18
martinahansen
fixed bug in find_adaptor
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2011-04-18
martinahansen
fixed bug in find_adaptor
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2011-04-18
martinahansen
added find_adaptor biopiece
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2011-04-16
martinahansen
cleaned patternmatcher code
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2011-04-15
martinahansen
pattern hell
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2011-04-14
martinahansen
updated patternmatcher code
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2011-04-14
martinahansen
added length check to read_454
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2011-04-14
martinahansen
fixed missing qual trimming in remove_mids
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2011-04-13
martinahansen
added remove_mids tests
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