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biopieces.git
2009-06-16 martinahansenfixed perl5.10 issue for soft parser commit | commitdiff | tree | snapshot
2009-06-16 martinahansenadded VMATCH support to get_genome_seq commit | commitdiff | tree | snapshot
2009-06-16 martinahansenfixed bug in time_stamp_diff commit | commitdiff | tree | snapshot
2009-06-15 martinahansenadded indel_seq commit | commitdiff | tree | snapshot
2009-06-15 martinahansenadded mutate_seq commit | commitdiff | tree | snapshot
2009-06-15 martinahansenadded non-overlapping feature to split_seq commit | commitdiff | tree | snapshot
2009-06-15 martinahansenfixed bug in Fasta.pm commit | commitdiff | tree | snapshot
2009-06-11 martinahansenadded Data::Dumper support to bioscript commit | commitdiff | tree | snapshot
2009-06-09 martinahansenfixed bug in plot_histogram commit | commitdiff | tree | snapshot
2009-06-09 martinahansenfixed bug in read_tab commit | commitdiff | tree | snapshot
2009-06-08 martinahansenrewrote bioscript commit | commitdiff | tree | snapshot
2009-06-08 martinahansenrewrote bioscript commit | commitdiff | tree | snapshot
2009-06-08 martinahansenfixed minor bugs commit | commitdiff | tree | snapshot
2009-06-06 martinahansenfixed bug in format_genome commit | commitdiff | tree | snapshot
2009-06-06 martinahansenfixes but in removal of tmp_dir commit | commitdiff | tree | snapshot
2009-06-06 martinahansenfixes done to tmp_dir commit | commitdiff | tree | snapshot
2009-06-06 martinahansenimplementing status solution commit | commitdiff | tree | snapshot
2009-06-06 martinahansenremoved variables bulk type commit | commitdiff | tree | snapshot
2009-06-06 martinahansenfixing status commit | commitdiff | tree | snapshot
2009-06-05 martinahansenadded align_pair_seq commit | commitdiff | tree | snapshot
2009-06-05 martinahansenmigration done commit | commitdiff | tree | snapshot
2009-06-05 martinahansenalmost done commit | commitdiff | tree | snapshot
2009-06-05 martinahansenmigrated removers commit | commitdiff | tree | snapshot
2009-06-05 martinahansenmigrated upload_to_ucsc commit | commitdiff | tree | snapshot
2009-06-04 martinahansenalmost there commit | commitdiff | tree | snapshot
2009-06-04 martinahansenfixed a couple of bugs - good commit | commitdiff | tree | snapshot
2009-06-04 martinahansenfixed bug in sort_records commit | commitdiff | tree | snapshot
2009-06-02 martinahansenbleh blah commit | commitdiff | tree | snapshot
2009-06-02 martinahansendeleting read_phastcons commit | commitdiff | tree | snapshot
2009-06-02 martinahansenremove bin dir commit | commitdiff | tree | snapshot
2009-06-02 martinahansen3 more again commit | commitdiff | tree | snapshot
2009-06-02 martinahansen3 more commit | commitdiff | tree | snapshot
2009-06-02 martinahansenmore read_ tools migrated commit | commitdiff | tree | snapshot
2009-06-02 martinahansenmigrating read_ tools commit | commitdiff | tree | snapshot
2009-06-02 martinahansenmigration of all write tools done commit | commitdiff | tree | snapshot
2009-06-02 martinahansenmigrated 3 write tools commit | commitdiff | tree | snapshot
2009-05-29 martinahansenmigrated final plotters commit | commitdiff | tree | snapshot
2009-05-29 martinahansenmigrated plot_lendist commit | commitdiff | tree | snapshot
2009-05-29 martinahansenmigrated plot_karyogram commit | commitdiff | tree | snapshot
2009-05-29 martinahansenmigrated plot_histogram commit | commitdiff | tree | snapshot
2009-05-29 martinahansenmigrated plot_chrdist commit | commitdiff | tree | snapshot
2009-05-28 martinahansenmigrated remove_adaptor commit | commitdiff | tree | snapshot
2009-05-28 martinahansenmigrated 4 more commit | commitdiff | tree | snapshot
2009-05-28 martinahansenmigrated tile_seq commit | commitdiff | tree | snapshot
2009-05-28 martinahansenmigrated sort_records commit | commitdiff | tree | snapshot
2009-05-28 martinahansenmigrated sum_vals commit | commitdiff | tree | snapshot
2009-05-28 martinahansenmigrated patscan_seq commit | commitdiff | tree | snapshot
2009-05-28 martinahansenmigrated patscan_seq commit | commitdiff | tree | snapshot
2009-05-27 martinahansenmigrated oligo_freq commit | commitdiff | tree | snapshot
2009-05-27 martinahansenmigrated trans family commit | commitdiff | tree | snapshot
2009-05-27 martinahansenmigrated merge_records commit | commitdiff | tree | snapshot
2009-05-27 martinahansenmigrated max, min, mean, and median _vals commit | commitdiff | tree | snapshot
2009-05-27 martinahansenmigrated match_seq commit | commitdiff | tree | snapshot
2009-05-27 martinahansenadded 3 more commit | commitdiff | tree | snapshot
2009-05-26 martinahansenmigrated 3 biopieces commit | commitdiff | tree | snapshot
2009-05-26 martinahansenmigrated create_vmatch_index commit | commitdiff | tree | snapshot
2009-05-26 martinahansenmigrated create_weight_matrix commit | commitdiff | tree | snapshot
2009-05-26 martinahansenmigrated count_vals commit | commitdiff | tree | snapshot
2009-05-26 martinahansenmigrated count_records commit | commitdiff | tree | snapshot
2009-05-26 martinahansenmigrated and fixed calc_fixedstep commit | commitdiff | tree | snapshot
2009-05-25 martinahansenmigrated calc_bit_scores commit | commitdiff | tree | snapshot
2009-05-25 martinahansenmigrated blat_seq commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated assemble_tag_contigs commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated split biopieces commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated split biopieces commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated random_records commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmagrated analyze biopieces commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmagrated analyze biopieces commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated write_align commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated align_seq commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated add_ident commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated shuffle_seq commit | commitdiff | tree | snapshot
2009-05-24 martinahansenmigrated complement_seq and reverse_seq commit | commitdiff | tree | snapshot
2009-05-23 martinahansenmigrated extract_seq commit | commitdiff | tree | snapshot
2009-05-23 martinahansenrewrite begin commit | commitdiff | tree | snapshot
2009-05-14 martinahansenpolishing split_vals commit | commitdiff | tree | snapshot
2009-05-13 martinahansenadded lowercase_seq symlink commit | commitdiff | tree | snapshot
2009-05-13 martinahansenfixing lowercase_seq commit | commitdiff | tree | snapshot
2009-05-13 martinahansenfixed symlink trouble commit | commitdiff | tree | snapshot
2009-05-13 martinahansengit-svn-id: http://biopieces.googlecode.com/svn/trunk... commit | commitdiff | tree | snapshot
2009-05-13 martinahansengit-svn-id: http://biopieces.googlecode.com/svn/trunk... commit | commitdiff | tree | snapshot
2009-05-13 martinahansenmoved all binaries and created symlinks instead commit | commitdiff | tree | snapshot
2009-05-12 martinahansensplit Biopieces.pm into BioRun.pm and Biopieces.pm commit | commitdiff | tree | snapshot
2009-05-12 martinahansenchanged wiki renderer commit | commitdiff | tree | snapshot
2008-12-17 martinahansenfixed BED BUG commit | commitdiff | tree | snapshot
2008-12-11 martinahansenlots of PSL related changes commit | commitdiff | tree | snapshot
2008-12-11 martinahansenadded exon capabilities to calc_fixedstep commit | commitdiff | tree | snapshot
2008-12-11 martinahansencalc_fixedstep reverted to perl commit | commitdiff | tree | snapshot
2008-12-11 martinahansenfixed carriage return bug in read_ucsc_config commit | commitdiff | tree | snapshot
2008-12-09 martinahansenadded splice to get_genome_seq commit | commitdiff | tree | snapshot
2008-12-09 martinahansenfixed bug in remove_ucsc_tracks commit | commitdiff | tree | snapshot
2008-12-08 martinahansenminor fixes commit | commitdiff | tree | snapshot
2008-12-08 martinahansenadded --check to a number of Biopieces commit | commitdiff | tree | snapshot
2008-12-08 martinahansenreverting to BED lists commit | commitdiff | tree | snapshot
2008-12-08 martinahansenchanged BED.pm from list to hash commit | commitdiff | tree | snapshot
2008-12-08 martinahansenmade check_bed optional commit | commitdiff | tree | snapshot
2008-12-05 martinahansenfixed CHR_BEG=0 bug commit | commitdiff | tree | snapshot
2008-12-05 martinahansenchanged barray from ushort to uint commit | commitdiff | tree | snapshot
2008-12-05 martinahansenadded bed2tag_contigs as backend to assemble_tag_contigs commit | commitdiff | tree | snapshot
2008-12-05 martinahansenadded bed2tag_contigs.c commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/