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biopieces.git
2011-04-13 martinahansenadded remove_mids commit | commitdiff | tree | snapshot
2011-04-11 martinahansenprettyfied gnuplots commit | commitdiff | tree | snapshot
2011-04-11 martinahansenadded persist to gnuplot commands commit | commitdiff | tree | snapshot
2011-03-30 martinahansenreverted patternmatcher to original commit | commitdiff | tree | snapshot
2011-03-30 martinahansenremoving Args.pyc from svn commit | commitdiff | tree | snapshot
2011-03-30 martinahansenupdated find_mids commit | commitdiff | tree | snapshot
2011-03-30 martinahansenupdated tests for find_mids commit | commitdiff | tree | snapshot
2011-03-30 martinahansenrenamed find_mids.in file commit | commitdiff | tree | snapshot
2011-03-30 martinahansenrenamed find_mids.in file commit | commitdiff | tree | snapshot
2011-03-29 martinahansenseq.rb update commit | commitdiff | tree | snapshot
2011-03-29 martinahansenadded final unit test to test_patternmatcher.rb commit | commitdiff | tree | snapshot
2011-03-29 martinahansenfixed Rakefile commit | commitdiff | tree | snapshot
2011-03-29 martinahansenremoved amatch dependency in ruby code commit | commitdiff | tree | snapshot
2011-03-28 martinahansenfixed patternmatcher.rb commit | commitdiff | tree | snapshot
2011-03-28 martinahansenadded PatternMatcher to ruby code commit | commitdiff | tree | snapshot
2011-03-20 martinahansenplain and hd match in ruby Seq.rb now works commit | commitdiff | tree | snapshot
2011-03-19 martinahansenworked on match code in Seq.rb commit | commitdiff | tree | snapshot
2011-03-19 martinahansenadded rdoc stuff commit | commitdiff | tree | snapshot
2011-03-19 martinahansenworked on match code for ruby Seq class commit | commitdiff | tree | snapshot
2011-03-19 martinahansenadded test_digest.rb commit | commitdiff | tree | snapshot
2011-03-19 martinahansensplit digest.rb from seq.rb commit | commitdiff | tree | snapshot
2011-03-19 martinahansenremoving align.rb code commit | commitdiff | tree | snapshot
2011-03-19 martinahansenremoving align.rb code commit | commitdiff | tree | snapshot
2011-03-19 martinahansencleanup of Filsys in ruby code commit | commitdiff | tree | snapshot
2011-03-18 martinahansenfilesys now polished commit | commitdiff | tree | snapshot
2011-03-18 martinahansenadded filesys commit | commitdiff | tree | snapshot
2011-03-18 martinahansenfixed stdin read for fastq and ruby code commit | commitdiff | tree | snapshot
2011-03-18 martinahansenpolishing stdin for ruby code commit | commitdiff | tree | snapshot
2011-03-17 martinahansenruby cleanup commit | commitdiff | tree | snapshot
2011-03-15 martinahansenfixed bug in bwa_seq commit | commitdiff | tree | snapshot
2011-03-14 martinahansenfixed missing license commit | commitdiff | tree | snapshot
2011-03-08 martinahansenupdated remove_illumina_adaptor commit | commitdiff | tree | snapshot
2011-03-07 martinahansenupdated remove_illumina_adaptor commit | commitdiff | tree | snapshot
2011-03-07 martinahansenadded hamming distance to adaptor location/clipping... commit | commitdiff | tree | snapshot
2011-03-07 martinahansenadded hamming_dist method to bits.rb commit | commitdiff | tree | snapshot
2011-03-07 martinahansenadded bits.rb and test_bits.rb commit | commitdiff | tree | snapshot
2011-02-20 martinahansenpolished seq.rb commit | commitdiff | tree | snapshot
2011-02-20 martinahansenadded remove_illumina_adaptor Biopiece commit | commitdiff | tree | snapshot
2011-02-19 martinahansenadded qual clipping to ruby code commit | commitdiff | tree | snapshot
2011-02-19 martinahansentried to fix unit testing errs in test_genbank.rb commit | commitdiff | tree | snapshot
2011-02-19 martinahansenadded Rakefile for unit testing of ruby code commit | commitdiff | tree | snapshot
2011-02-19 martinahansenadded adaptor_locate and adaptor_clip methods to ruby... commit | commitdiff | tree | snapshot
2011-02-11 martinahansenfixed typo in sff.rb commit | commitdiff | tree | snapshot
2011-02-11 martinahansenfixed typo in base36.rb commit | commitdiff | tree | snapshot
2011-02-11 martinahansenupdated tests for read_sff commit | commitdiff | tree | snapshot
2011-02-11 martinahansenadded xy-coord extraction code to sff.rb commit | commitdiff | tree | snapshot
2011-02-11 martinahansenadded xy-coord extraction code to sff.rb commit | commitdiff | tree | snapshot
2011-02-11 martinahansenadded base36.rb Ruby library commit | commitdiff | tree | snapshot
2011-02-08 martinahansenremoving stale test file commit | commitdiff | tree | snapshot
2011-02-08 martinahansenadded read_sff biopiece commit | commitdiff | tree | snapshot
2011-02-03 martinahansenrefactored shred_seq commit | commitdiff | tree | snapshot
2011-02-03 martinahansenadded subseq and subseq_rand methods to seq.rb commit | commitdiff | tree | snapshot
2011-02-03 martinahansencrude polish of shred_seq commit | commitdiff | tree | snapshot
2011-02-02 martinahansenadded echo_yellow to testing code commit | commitdiff | tree | snapshot
2011-02-01 martinahansenadded analyze_assembly biopiece commit | commitdiff | tree | snapshot
2011-02-01 martinahansenadded kmer_freq biopiece and tests commit | commitdiff | tree | snapshot
2011-02-01 martinahansenadded generate_oligos method to seq.rb commit | commitdiff | tree | snapshot
2011-01-31 martinahansenpython update? commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded tests of calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenfixed bug in calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenremove calc_n50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenremoving calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansen... argh! commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded calc_N50 biopiece commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadd out accessor to Biopieces ruby code commit | commitdiff | tree | snapshot
2011-01-31 martinahansenrevoking data_out magic commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded :data_out magic to Biopeices ruby code commit | commitdiff | tree | snapshot
2011-01-30 martinahansenpolished shred_seq commit | commitdiff | tree | snapshot
2011-01-30 martinahansenpolished shred_seq commit | commitdiff | tree | snapshot
2011-01-29 martinahansenfixed bug in shred_seq commit | commitdiff | tree | snapshot
2011-01-29 martinahansenadded shred_seq tests commit | commitdiff | tree | snapshot
2011-01-29 martinahansenadded shred_seq biopiece commit | commitdiff | tree | snapshot
2011-01-29 martinahansenadded version test of perl and ruby commit | commitdiff | tree | snapshot
2011-01-26 martinahansenadded warning in bashrc commit | commitdiff | tree | snapshot
2011-01-23 martinahansenadded Seq#to_key method commit | commitdiff | tree | snapshot
2011-01-22 martinahansenchanged seq names to 0 based in Digest#each commit | commitdiff | tree | snapshot
2011-01-22 martinahansenupdated tests for digest_seq commit | commitdiff | tree | snapshot
2011-01-22 martinahansenadded S_BEG and S_END keys to digest_seq commit | commitdiff | tree | snapshot
2011-01-22 martinahansenfixed missing upcase bug in ruby Seq#Digest::each commit | commitdiff | tree | snapshot
2011-01-20 martinahansenpolish of bitarray.rb commit | commitdiff | tree | snapshot
2011-01-20 martinahansenslight cleanup of find_gaps commit | commitdiff | tree | snapshot
2011-01-17 martinahansenadded tests for find_gaps commit | commitdiff | tree | snapshot
2011-01-17 martinahansenfixed bug in Fasta.pm commit | commitdiff | tree | snapshot
2011-01-14 martinahansenfinishing unit tests for bitarray.rb commit | commitdiff | tree | snapshot
2011-01-14 martinahansenfixed license text commit | commitdiff | tree | snapshot
2011-01-14 martinahansenadded S_LEN to find_gaps commit | commitdiff | tree | snapshot
2011-01-14 martinahansenadded bitarray ruby code commit | commitdiff | tree | snapshot
2011-01-12 martinahansenposished Calc::standard_deviation commit | commitdiff | tree | snapshot
2011-01-10 martinahansenfixed SEQ_LEN bug in transliterate_seq commit | commitdiff | tree | snapshot
2011-01-03 martinahansenmisq updates commit | commitdiff | tree | snapshot
2010-12-31 martinahansenpolishing find_mids commit | commitdiff | tree | snapshot
2010-12-21 martinahansenfixed bug in bwa_seq commit | commitdiff | tree | snapshot
2010-12-17 martinahansenadded contributed biopieces calc_density commit | commitdiff | tree | snapshot
2010-12-16 martinahansenadded min option to find_homopolymers commit | commitdiff | tree | snapshot
2010-12-16 martinahansenspeedup fix of max_homopol again commit | commitdiff | tree | snapshot
2010-12-16 martinahansenspeedup fix of max_homopol commit | commitdiff | tree | snapshot
2010-12-16 martinahansenadded find_homopolymers biopiece commit | commitdiff | tree | snapshot
2010-12-13 martinahansenadded QA_Solexa_report.sh commit | commitdiff | tree | snapshot
2010-12-13 martinahansenadded QA_454_report.sh biopiece script commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/