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mothur.git
2010-08-12 pschlossfixed a trimming bug in sffinfo which occurs when the... commit | commitdiff | tree | snapshot
2010-08-12 pschlossfixed int bug in simpson.cpp commit | commitdiff | tree | snapshot
2010-08-06 westcottadded oldfasta and column parameter to dist.seqs so... commit | commitdiff | tree | snapshot
2010-08-06 westcottadded versioning info to all shortcut files mothur... commit | commitdiff | tree | snapshot
2010-08-05 westcottadded summary, collect, and scale parameters to phylo... commit | commitdiff | tree | snapshot
2010-08-05 westcottfixed bug with creation of .tree.sum file commit | commitdiff | tree | snapshot
2010-08-03 westcottadded countgaps parameter to chop.seqs command commit | commitdiff | tree | snapshot
2010-08-03 westcottmodified the engine to extract the path of mothur execu... commit | commitdiff | tree | snapshot
2010-08-02 westcottfixed bug with phylo.diversity. not calculating as... commit | commitdiff | tree | snapshot
2010-07-30 westcottchanges for 1.12.2 commit | commitdiff | tree | snapshot
2010-07-30 westcottchanges for 1.12.2 commit | commitdiff | tree | snapshot
2010-07-29 pschlossanother attempt to fix sffinfo commit | commitdiff | tree | snapshot
2010-07-29 westcott1.12.1 commit | commitdiff | tree | snapshot
2010-07-29 pschlossanother pds fix to sffinfo commit | commitdiff | tree | snapshot
2010-07-29 pschlossanother pds fix to sffinfo commit | commitdiff | tree | snapshot
2010-07-29 pschlosspds' small change to sffinfo commit | commitdiff | tree | snapshot
2010-07-28 westcottsome bug fixes commit | commitdiff | tree | snapshot
2010-07-28 pschlosspat's slight modifications to trim.seqs commit | commitdiff | tree | snapshot
2010-07-23 westcott1.12.0 commit | commitdiff | tree | snapshot
2010-07-22 westcottfixes while testing 1.12.0 commit | commitdiff | tree | snapshot
2010-07-20 westcottadded tempdefault to set.dir and fixed bug with padding... commit | commitdiff | tree | snapshot
2010-07-19 westcottadded ordergroup parameter to read.otu commit | commitdiff | tree | snapshot
2010-07-19 pschlosspat's updates on 7/19/10 commit | commitdiff | tree | snapshot
2010-07-19 westcottadded compile time default path commit | commitdiff | tree | snapshot
2010-07-19 westcottadded fasta, qfile, trim, accnos and sfftxt parameter... commit | commitdiff | tree | snapshot
2010-07-15 westcottsffinfo command is working commit | commitdiff | tree | snapshot
2010-07-15 westcottsffinfo command is working commit | commitdiff | tree | snapshot
2010-07-15 westcottworking on sffinfo commit | commitdiff | tree | snapshot
2010-07-14 westcottworking on sffinfo command. commit | commitdiff | tree | snapshot
2010-07-14 westcottworking on sffinfo command. commit | commitdiff | tree | snapshot
2010-07-14 westcottworking on sffinfo command. commit | commitdiff | tree | snapshot
2010-07-14 pschlosspat's changes to trim.seqs commit | commitdiff | tree | snapshot
2010-07-14 westcottstarted work on sffinfo command. fixed bug across... commit | commitdiff | tree | snapshot
2010-07-07 pschlossmodified makefile and sensspeccommand files commit | commitdiff | tree | snapshot
2010-07-06 pschlosssens.spec changes commit | commitdiff | tree | snapshot
2010-07-06 westcottfixed trim.seqs bug commit | commitdiff | tree | snapshot
2010-07-06 westcottrechecking in commit | commitdiff | tree | snapshot
2010-07-06 westcotttrim.seqs couts commit | commitdiff | tree | snapshot
2010-06-30 westcottmodified trim.seqs to split by primer name if primer... commit | commitdiff | tree | snapshot
2010-06-28 westcottadded groups option to get.oturep command commit | commitdiff | tree | snapshot
2010-06-24 westcottcreated blank accnos in chimera commands if no seqs... commit | commitdiff | tree | snapshot
2010-06-23 westcottfixed bug with cluster class. when we added the change... commit | commitdiff | tree | snapshot
2010-06-23 westcottfixed cluster.split with average method commit | commitdiff | tree | snapshot
2010-06-22 westcottfinished get.relabund command commit | commitdiff | tree | snapshot
2010-06-22 westcottfinished get.relabund command commit | commitdiff | tree | snapshot
2010-06-22 westcottadded mpi code to cluster.split command commit | commitdiff | tree | snapshot
2010-06-22 westcottadded mpi code to cluster.split command commit | commitdiff | tree | snapshot
2010-06-21 westcottadded degap.seqs command commit | commitdiff | tree | snapshot
2010-06-21 westcottmodified chimera commands to process multiple fasta... commit | commitdiff | tree | snapshot
2010-06-18 westcottremoved blast files generated by chimera.slayer, altere... commit | commitdiff | tree | snapshot
2010-06-18 westcottfixed problem with trim.seqs writing over files if... commit | commitdiff | tree | snapshot
2010-06-18 westcottfixed problem with chimera.slayer realigner commit | commitdiff | tree | snapshot
2010-06-17 westcottchanges for 1.11 commit | commitdiff | tree | snapshot
2010-06-17 westcottchanges while testing 1.11 commit | commitdiff | tree | snapshot
2010-06-17 pschlossmade a small mod to the alignment parameters in trim... commit | commitdiff | tree | snapshot
2010-06-16 westcottfixes while testing commit | commitdiff | tree | snapshot
2010-06-15 westcottchanged how we count sequences in a fastafile to allow... commit | commitdiff | tree | snapshot
2010-06-15 westcottchanged how we count sequences in a fastafile to allow... commit | commitdiff | tree | snapshot
2010-06-15 westcottfinal commit before testing 1.11 commit | commitdiff | tree | snapshot
2010-06-14 westcottmodified chop.seqs commit | commitdiff | tree | snapshot
2010-06-14 westcottfixed read.tree so that it can read trees generated... commit | commitdiff | tree | snapshot
2010-06-14 westcottadded fasta method to cluster.split commit | commitdiff | tree | snapshot
2010-06-14 westcottfixed bug in cluster.split commit | commitdiff | tree | snapshot
2010-06-14 westcottfixed pintail bug commit | commitdiff | tree | snapshot
2010-06-12 pschlosspat's mod to trim.seqs commit | commitdiff | tree | snapshot
2010-06-11 westcottfixed bug in cluster.split with classify method commit | commitdiff | tree | snapshot
2010-06-10 westcottcommitting so I can work on the other machine commit | commitdiff | tree | snapshot
2010-06-09 pschlossfixed bug in nast:removeextragaps commit | commitdiff | tree | snapshot
2010-06-09 pschlossadded weightedlinkage.cpp commit | commitdiff | tree | snapshot
2010-06-09 westcottchanges to blastdb to make filenames given to blast... commit | commitdiff | tree | snapshot
2010-06-09 westcottchanges to blastdb to make filenames given to blast... commit | commitdiff | tree | snapshot
2010-06-04 westcottsped up splitting of distance file by 2.5 times by... commit | commitdiff | tree | snapshot
2010-06-03 westcottfixed cluster.split command commit | commitdiff | tree | snapshot
2010-06-02 westcottadded sort parameter to get.otulist commit | commitdiff | tree | snapshot
2010-06-02 westcottadded taxonomy file to list of files list.seqs, get... commit | commitdiff | tree | snapshot
2010-06-02 westcottadded classify.otu command commit | commitdiff | tree | snapshot
2010-06-02 westcottadded classify.otu command commit | commitdiff | tree | snapshot
2010-06-01 westcottchanged the daughterLevels in classifiers summary file... commit | commitdiff | tree | snapshot
2010-06-01 westcottlatest version commit | commitdiff | tree | snapshot
2010-05-28 westcottfinished cluster.split adding classify method. commit | commitdiff | tree | snapshot
2010-05-28 westcottchanged hard parameter in cluster commands commit | commitdiff | tree | snapshot
2010-05-27 westcottfixed project commit | commitdiff | tree | snapshot
2010-05-27 westcottchanges to chop.seqs commit | commitdiff | tree | snapshot
2010-05-26 pschlossfixed bugs with trim.seqs and bdiffs commit | commitdiff | tree | snapshot
2010-05-20 westcott cluster.split command commit | commitdiff | tree | snapshot
2010-05-20 westcottfixed phylip convert for cluster.split command commit | commitdiff | tree | snapshot
2010-05-20 westcottadded cluster.split command commit | commitdiff | tree | snapshot
2010-05-18 westcottadded split.abund comand commit | commitdiff | tree | snapshot
2010-05-17 westcottchange to phylo.diversity to make output = total branch... commit | commitdiff | tree | snapshot
2010-05-14 westcott1.10.0 commit | commitdiff | tree | snapshot
2010-05-12 westcottmodified freq parameter be a percentage of numSeqs... commit | commitdiff | tree | snapshot
2010-05-11 westcottadded clearcut command commit | commitdiff | tree | snapshot
2010-05-10 westcottadded chop.seqs command commit | commitdiff | tree | snapshot
2010-05-10 westcottfixed problem with class.fy.seqs where group totals... commit | commitdiff | tree | snapshot
2010-05-10 westcottadded make.group command commit | commitdiff | tree | snapshot
2010-05-10 westcottworked on trim.seqs commit | commitdiff | tree | snapshot
2010-05-10 westcottworked on trim.seqs commit | commitdiff | tree | snapshot
2010-05-10 pschlosspds - modified strip barcode funcrtion in trimseqscommand commit | commitdiff | tree | snapshot
2010-05-07 westcottchanged confidence scores calculation in bayesian commit | commitdiff | tree | snapshot
2010-05-07 westcottmodified trim.seqs to account for primers of different... commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches