2011-03-01 |
Heng Li | * optionally drop phase ambiguous reads |
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2011-02-28 |
Heng Li | minor changes to a heuristic rule |
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2011-02-28 |
Heng Li | * 0.1.12-r924:126 |
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2011-02-28 |
Heng Li | * put version number in bam.h |
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2011-02-25 |
Heng Li | * change the order of PL/GL according to the latest... |
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2011-02-25 |
Heng Li | update the BCF spec |
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2011-02-25 |
Heng Li | added the phase command |
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2011-02-24 |
Heng Li | added "const" to bcf_p1_cal() |
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2011-02-24 |
Heng Li | more meaningful BAM truncation message |
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2011-02-24 |
Heng Li | * automatically fix errors in GL |
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2011-02-11 |
Heng Li | finished VCF->BCF conversion |
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2011-02-03 |
Petr Danecek | Prevent division by zero |
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2011-02-02 |
Heng Li | fixed a typo in the VCF header |
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2011-02-02 |
Heng Li | * fixed an out-of-boundary bug |
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2011-01-30 |
Heng Li | * avoid a segfault when network connect fails |
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2011-01-27 |
Heng Li | * fixed a rare memory issue in bam_md.c |
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2011-01-24 |
Heng Li | fixed two minor bugs in Fisher's exact test |
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2011-01-19 |
Petr Danecek | Skip sites with unknown ref |
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2011-01-15 |
Heng Li | move bam_nt16_nt4_table[] from bam_maqcns.c to bam_md.c |
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2011-01-06 |
Heng Li | * samtools-0.1.12-10 (r896) |
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2011-01-04 |
Heng Li | sorry. It is SP not ST |
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2011-01-04 |
Heng Li | added ST |
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2011-01-04 |
Petr Danecek | Fixed a typo in read_samples |
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2010-12-28 |
On behalf of... | System libraries go *after* user libraries in link... |
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2010-12-21 |
Heng Li | * samtools-0.1.12-9 (r891) |
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2010-12-15 |
Heng Li | * samtools-0.1.12-12 (r889) |
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2010-12-15 |
Heng Li | When -B is applied to mpileup, still use paired reads... |
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2010-12-15 |
Heng Li | * samtools-0.1.12-6 (r887) |
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2010-12-14 |
Heng Li | (Arguably) improved the indel caller a tiny bit for... |
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2010-12-14 |
Petr Danecek | Fixed the VCF header to pass validation |
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2010-12-13 |
Heng Li | * samtools-0.1.12-4 (r884) |
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2010-12-12 |
Heng Li | compute max SP and max GQ from sample genotypes |
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2010-12-10 |
Heng Li | drop bcf-fix.pl as it is redundant by the latest changes |
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2010-12-10 |
Heng Li | * fixed a minor issue in printing VCFs |
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2010-12-10 |
Heng Li | Make sure that the GT genotype field is the first |
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2010-12-08 |
Heng Li | * samtools-0.1.12-2 (r877) |
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2010-12-08 |
Heng Li | a spelling error.. |
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2010-12-08 |
Heng Li | * samtools-0.1.12-1 (r873) |
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2010-12-07 |
Heng Li | fixed a bug in vcf2fq |
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2010-12-05 |
Heng Li | added a warning for the Windows version |
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2010-12-05 |
Heng Li | In ksprintf(), change "%lf" and "%lg" to "%f" and ... |
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2010-12-05 |
Heng Li | bring back the windows support |
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2010-12-05 |
Heng Li | Fixed a compiling error when knetfile is not used. |
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2010-12-04 |
Heng Li | vcf->fastq |
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2010-12-03 |
Heng Li | * remove "-f". Instead always compute consensus quality |
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2010-12-03 |
Heng Li | more informative error message |
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2010-12-02 |
Heng Li | Release samtools-0.1.12a |
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2010-12-02 |
Heng Li | a possible fix to DP4=0,0,0,0; have not tested, but... |
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2010-12-02 |
Heng Li | Release samtools-0.1.12 |
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2010-12-02 |
Heng Li | * samtools-0.1.11-1 (r858) |
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2010-12-01 |
Heng Li | fixed a memory leak in bam_fetch() |
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2010-11-26 |
Heng Li | * fixed a memory violation |
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2010-11-23 |
Heng Li | fixed a typo/bug in r^2 computation |
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2010-11-22 |
Heng Li | forget to change the version information |
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2010-11-22 |
Heng Li | Release samtools-0.1.11 |
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2010-11-20 |
Heng Li | * samtools-0.1.10-9 (r844) |
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2010-11-20 |
Heng Li | In merging, if -R is specified, do not abort if the... |
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2010-11-20 |
On behalf of... | When merging BAM headers, compare the list of target... |
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2010-11-19 |
Heng Li | * samtools-0.1.10 (r841) |
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2010-11-19 |
Heng Li | * samtools-0.1.10-4 (r840) |
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2010-11-18 |
Heng Li | * samtools-0.1.10-6 (r839) |
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2010-11-18 |
Heng Li | Apply a patch by Rob Davis, which improves fault detection. |
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2010-11-18 |
Heng Li | * samtools-r836 |
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2010-11-18 |
Heng Li | * modify the filtering rule: also filter SNPs around... |
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2010-11-18 |
Heng Li | * samtools-0.1.10-4 (r834) |
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2010-11-18 |
Heng Li | fixed a bug in printing MNPs |
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2010-11-18 |
Heng Li | minor change to how seqQ is applied |
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2010-11-18 |
Heng Li | * samtools-0.1.10 (r831) |
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2010-11-17 |
Heng Li | Release samtools-0.1.10 (r829) |
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2010-11-17 |
Heng Li | update version information: samtools-0.1.9-20 (r828) |
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2010-11-16 |
Heng Li | bcftools: allow to skip indels |
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2010-11-16 |
Heng Li | remove ZQ if both BQ and ZQ are present |
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2010-11-16 |
Heng Li | * samtools-0.1.9-18 (r825) |
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2010-11-16 |
Heng Li | * samtools-0.1.9-17 (r824) |
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2010-11-15 |
Heng Li | * samtools-0.1.9-r823 |
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2010-11-15 |
Heng Li | * samtools-0.1.9-16 (r822) |
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2010-11-13 |
Heng Li | * samtools-0.1.9-15 (r821) |
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2010-11-13 |
Heng Li | * samtools-0.1.9-14 (r820) |
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2010-11-13 |
Heng Li | * samtools-0.1.9-13 (r819) |
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2010-11-12 |
Heng Li | * samtools-r818 |
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2010-11-12 |
Heng Li | * samtools-0.1.19-11 (r817) |
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2010-11-11 |
Heng Li | * samtools-0.1.9-10 (r816) |
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2010-11-11 |
Heng Li | effectively revert to the viterbi version. The forward... |
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2010-11-11 |
Heng Li | * samtools-0.1.9-9 (r810) |
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2010-11-11 |
Heng Li | * prepare to replace kaln with kprobaln in realignment |
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2010-11-10 |
Heng Li | fixed a typo |
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2010-11-10 |
Heng Li | use zlib for direct reading when BCF_LITE is in use |
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2010-11-10 |
Heng Li | * do not use reads containing too many mismatches... |
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2010-11-10 |
Heng Li | * samtools-0.1.9-8 (r809) |
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2010-11-10 |
Heng Li | minor change to makefile |
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2010-11-10 |
Heng Li | * samtools-0.1.9-8 (r807) |
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2010-11-10 |
Heng Li | bcftools: compute equal-tail (Bayesian) credible interval |
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2010-11-09 |
Heng Li | added a double-hit filter to avoid overestimated indel... |
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2010-11-09 |
Heng Li | * samtools-0.1.9-7 (r804) |
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2010-11-09 |
Heng Li | * samtools-0.1.9-6 (r803) |
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2010-11-09 |
Heng Li | * samtools-0.1.9-5 (r802) |
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2010-11-09 |
Heng Li | * samtools-0.1.9-4 (r801) |
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2010-11-08 |
Heng Li | fixed another silly bug in mpileup's indel caller |
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2010-11-08 |
Heng Li | fixed a silly bug in the indel caller |
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2010-11-08 |
Heng Li | Incorporate patches by Marcel Martin for read counting. |
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next |