2009-11-02 |
westcott | added groups option to read.otu, added qtrim option... |
commit | commitdiff | tree | snapshot |
2009-10-29 |
westcott | fixed bug with hcluster |
commit | commitdiff | tree | snapshot |
2009-10-29 |
westcott | added hcluster command and fixed some bugs, namely... |
commit | commitdiff | tree | snapshot |
2009-10-12 |
westcott | finished chimeraslayer method and added get.listcount... |
commit | commitdiff | tree | snapshot |
2009-09-29 |
westcott | working on chimeraslayer and found bug in shared command. |
commit | commitdiff | tree | snapshot |
2009-09-28 |
westcott | started adding chimeraslayer method and fixed minor... |
commit | commitdiff | tree | snapshot |
2009-09-23 |
westcott | added get.sharedotu command |
commit | commitdiff | tree | snapshot |
2009-09-22 |
westcott | removed line option |
commit | commitdiff | tree | snapshot |
2009-09-21 |
westcott | align.check command added |
commit | commitdiff | tree | snapshot |
2009-09-18 |
westcott | adding more error checking for list and group files... |
commit | commitdiff | tree | snapshot |
2009-09-18 |
westcott | removing extra file output from pintail |
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2009-09-17 |
westcott | added check for blank files in openInputFile, add check... |
commit | commitdiff | tree | snapshot |
2009-09-15 |
westcott | fixed some issues while testing 1.6 |
commit | commitdiff | tree | snapshot |
2009-09-14 |
westcott | added help to chimera.seqs |
commit | commitdiff | tree | snapshot |
2009-09-11 |
westcott | chimeracheck method added |
commit | commitdiff | tree | snapshot |
2009-09-09 |
westcott | continued work on chimeras and fixed bug in trim.seqs... |
commit | commitdiff | tree | snapshot |
2009-09-08 |
westcott | finished with ccode, returned bellerophon to last save... |
commit | commitdiff | tree | snapshot |
2009-09-04 |
westcott | changed reporting in ccode to only report those who... |
commit | commitdiff | tree | snapshot |
2009-09-04 |
westcott | ccode working - still need to paralellize |
commit | commitdiff | tree | snapshot |
2009-09-02 |
westcott | updated pats contact and mothur header info |
commit | commitdiff | tree | snapshot |
2009-09-01 |
westcott | changed raredisplay to use vectors instead of files |
commit | commitdiff | tree | snapshot |
2009-09-01 |
westcott | added more descriptive error messages to sharedlist |
commit | commitdiff | tree | snapshot |
2009-08-31 |
westcott | checking in chimera files in progress after move to... |
commit | commitdiff | tree | snapshot |
2009-08-13 |
westcott | last changes before move |
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2009-08-13 |
westcott | last changes before move |
commit | commitdiff | tree | snapshot |
2009-08-12 |
westcott | removing mallard |
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2009-08-11 |
westcott | chimera.seqs pintail is working. |
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2009-08-10 |
pschloss | mothur-v.1.5.0 |
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2009-08-06 |
westcott | This is 1.5. |
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2009-08-06 |
westcott | bugs fixes while testing for 1.5 release |
commit | commitdiff | tree | snapshot |
2009-08-05 |
westcott | bugs fixes while testing for 1.5 release |
commit | commitdiff | tree | snapshot |
2009-08-05 |
westcott | bugs fixes while testing for 1.5 release |
commit | commitdiff | tree | snapshot |
2009-08-03 |
westcott | bugs for 1.5 |
commit | commitdiff | tree | snapshot |
2009-08-03 |
westcott | bugs for 1.5 |
commit | commitdiff | tree | snapshot |
2009-08-02 |
westcott | bugs fixes while testing for 1.5 release |
commit | commitdiff | tree | snapshot |
2009-08-01 |
westcott | bugs fixes while testing for 1.5 release |
commit | commitdiff | tree | snapshot |
2009-07-30 |
westcott | working on chimeras |
commit | commitdiff | tree | snapshot |
2009-07-30 |
pschloss | pat's changes after generating wiki pages for 1.5 |
commit | commitdiff | tree | snapshot |
2009-07-30 |
westcott | Thallinger changes to cluster command. |
commit | commitdiff | tree | snapshot |
2009-07-30 |
pschloss | pat's edits prior to v.1.5 |
commit | commitdiff | tree | snapshot |
2009-07-28 |
westcott | working on chimeras |
commit | commitdiff | tree | snapshot |
2009-07-26 |
westcott | fixed bug with aligner in database class, worked on... |
commit | commitdiff | tree | snapshot |
2009-07-22 |
westcott | worked on chimeras |
commit | commitdiff | tree | snapshot |
2009-07-22 |
westcott | changed sequence class so that when constructor is... |
commit | commitdiff | tree | snapshot |
2009-07-20 |
westcott | fixed bugs in venn and aligner |
commit | commitdiff | tree | snapshot |
2009-07-14 |
westcott | *** empty log message *** |
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2009-07-10 |
westcott | added sorted option to get.rabund command |
commit | commitdiff | tree | snapshot |
2009-07-09 |
westcott | added getline function to mothur and modified places... |
commit | commitdiff | tree | snapshot |
2009-07-08 |
westcott | added stricter compilation requirements and fixed resul... |
commit | commitdiff | tree | snapshot |
2009-07-08 |
westcott | added system command |
commit | commitdiff | tree | snapshot |
2009-07-08 |
westcott | added remove.seqs command |
commit | commitdiff | tree | snapshot |
2009-07-08 |
westcott | added get.seqs command |
commit | commitdiff | tree | snapshot |
2009-07-08 |
westcott | added list.seqs command |
commit | commitdiff | tree | snapshot |
2009-07-06 |
westcott | fixed bug in sequencedb read for windows users and... |
commit | commitdiff | tree | snapshot |
2009-07-02 |
westcott | made changes to concensus to find a better tree. also... |
commit | commitdiff | tree | snapshot |
2009-06-29 |
westcott | fixed misspelling on consensus |
commit | commitdiff | tree | snapshot |
2009-06-29 |
westcott | fixed bug in bootstrap command that was caused by globa... |
commit | commitdiff | tree | snapshot |
2009-06-29 |
westcott | modified read.otu and shared command |
commit | commitdiff | tree | snapshot |
2009-06-25 |
westcott | added logfile feature |
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2009-06-23 |
pschloss | mothur v.1.4.1 |
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2009-06-23 |
westcott | changed how we do "smart" distancing |
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2009-06-22 |
westcott | worked on parselist and shared commands, removing memor... |
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2009-06-21 |
pschloss | This is v.1.4.0 |
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2009-06-19 |
westcott | version 1.4 |
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2009-06-19 |
westcott | version working on mac with .tellg changed to unget... |
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2009-06-18 |
westcott | fixed some bugs |
commit | commitdiff | tree | snapshot |
2009-06-18 |
pschloss | added an alignreport option to screen seqs |
commit | commitdiff | tree | snapshot |
2009-06-16 |
pschloss | a few minor things - pds |
commit | commitdiff | tree | snapshot |
2009-06-16 |
westcott | fixed some bugs and added scriptengine |
commit | commitdiff | tree | snapshot |
2009-06-15 |
westcott | fixing minor bugs |
commit | commitdiff | tree | snapshot |
2009-06-15 |
westcott | removed validcommands and put its checking in commandfa... |
commit | commitdiff | tree | snapshot |
2009-06-14 |
pschloss | merged pat's trim seqs edits with sarah's major overhau... |
commit | commitdiff | tree | snapshot |
2009-06-12 |
westcott | broke up globaldata and moved error checking and help... |
commit | commitdiff | tree | snapshot |
2009-06-08 |
westcott | got rid of extra temp files in dist.seqs |
commit | commitdiff | tree | snapshot |
2009-06-08 |
westcott | added help for heatmap.sim |
commit | commitdiff | tree | snapshot |
2009-06-08 |
westcott | added heatmap.sim command and changed heatmap to heatma... |
commit | commitdiff | tree | snapshot |
2009-06-08 |
pschloss | fixed how seq.dists divides the matrix for multiple... |
commit | commitdiff | tree | snapshot |
2009-06-08 |
pschloss | added some features to trim.seqs |
commit | commitdiff | tree | snapshot |
2009-06-08 |
westcott | dist.seqs can now use n processors, and only outputs... |
commit | commitdiff | tree | snapshot |
2009-06-07 |
pschloss | modified trim.seqs command |
commit | commitdiff | tree | snapshot |
2009-06-06 |
pschloss | added trim.seqs command |
commit | commitdiff | tree | snapshot |
2009-06-06 |
pschloss | added reverse.seqs command |
commit | commitdiff | tree | snapshot |
2009-06-05 |
westcott | line and label no longer persist between commands.... |
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2009-06-04 |
pschloss | remove some files |
commit | commitdiff | tree | snapshot |
2009-06-04 |
westcott | removed readseqs, readfasta, readnexus, readclustal... |
commit | commitdiff | tree | snapshot |
2009-06-04 |
pschloss | modified filter.seqs to not store all seqs in memory... |
commit | commitdiff | tree | snapshot |
2009-06-04 |
pschloss | *** empty log message *** |
commit | commitdiff | tree | snapshot |
2009-06-04 |
westcott | fixed some bugs |
commit | commitdiff | tree | snapshot |
2009-06-04 |
pschloss | pat's edits of screen.seqs and summary.seqs |
commit | commitdiff | tree | snapshot |
2009-06-03 |
pschloss | fixed a bug in calculating the # of ambig bases |
commit | commitdiff | tree | snapshot |
2009-06-03 |
pschloss | added screen.seqs command - pds |
commit | commitdiff | tree | snapshot |
2009-06-03 |
westcott | added get.rabund and get.sabund command and fixed bug... |
commit | commitdiff | tree | snapshot |
2009-06-03 |
pschloss | addition of summary.seq command [pds] |
commit | commitdiff | tree | snapshot |
2009-06-02 |
westcott | allow user to input quit instead of quit() |
commit | commitdiff | tree | snapshot |
2009-06-02 |
westcott | added smart distance feature and optimized all commands... |
commit | commitdiff | tree | snapshot |
2009-06-01 |
westcott | fixed bug for windows users with read.dist |
commit | commitdiff | tree | snapshot |
2009-06-01 |
westcott | *** empty log message *** |
commit | commitdiff | tree | snapshot |
2009-05-27 |
westcott | fixed multiple bugs for 1.4 release |
commit | commitdiff | tree | snapshot |
2009-05-24 |
pschloss | This contains Pat's bug fixes and updates. It represen... |
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2009-05-22 |
westcott | changed defaults for filter.seqs() |
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next |