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biopieces.git
2009-12-03 martinahansenfixed inline PNG in Bbrowser commit | commitdiff | tree | snapshot
2009-12-02 martinahansenimplemented search function in bbrowser commit | commitdiff | tree | snapshot
2009-12-01 martinahansenadded DB.pm commit | commitdiff | tree | snapshot
2009-12-01 martinahansenadded DB.pm commit | commitdiff | tree | snapshot
2009-12-01 martinahansenset bbrowser and GFF to 0-base commit | commitdiff | tree | snapshot
2009-12-01 martinahansenfixed IO rename in write_kiss commit | commitdiff | tree | snapshot
2009-12-01 martinahansenrename mistake fix2 commit | commitdiff | tree | snapshot
2009-12-01 martinahansenrename mistake fix1 commit | commitdiff | tree | snapshot
2009-12-01 martinahansenrenamed KISS browser to Biopiece browser commit | commitdiff | tree | snapshot
2009-11-27 martinahansenadded dna export to browser commit | commitdiff | tree | snapshot
2009-11-27 martinahansenchanges to browser commit | commitdiff | tree | snapshot
2009-11-26 martinahansencleaned BBrowser::Tracks.pm commit | commitdiff | tree | snapshot
2009-11-26 martinahansenCleaned BBrowser::Draw commit | commitdiff | tree | snapshot
2009-11-26 martinahansencleaned KISS.pm commit | commitdiff | tree | snapshot
2009-11-26 martinahansenfinished cleaning index.cgi commit | commitdiff | tree | snapshot
2009-11-26 martinahansenremoved KISS directory commit | commitdiff | tree | snapshot
2009-11-26 martinahansenwww relayout commit | commitdiff | tree | snapshot
2009-11-26 martinahansenwww relayout commit | commitdiff | tree | snapshot
2009-11-25 martinahansenmore KISS commit | commitdiff | tree | snapshot
2009-11-25 martinahansenfixed color palette in KISS commit | commitdiff | tree | snapshot
2009-11-25 martinahansenfixed KISS browser genome selection commit | commitdiff | tree | snapshot
2009-11-24 martinahansenfixed comma bug commit | commitdiff | tree | snapshot
2009-11-24 martinahansenkiss_sort() commit | commitdiff | tree | snapshot
2009-11-24 martinahansenfixed KISS commit | commitdiff | tree | snapshot
2009-11-24 martinahansenrewrote upload_to_KISS commit | commitdiff | tree | snapshot
2009-11-24 martinahansenmajor work on KISS browser completed commit | commitdiff | tree | snapshot
2009-11-16 martinahansenhacked read_soft to deal with soft_files wo platform... commit | commitdiff | tree | snapshot
2009-11-16 martinahansenmisc changes commit | commitdiff | tree | snapshot
2009-11-13 martinahansenwrite_kiss now do blast output commit | commitdiff | tree | snapshot
2009-11-09 martinahansenadded analyze_snp commit | commitdiff | tree | snapshot
2009-11-09 martinahansenfixed SAM bug commit | commitdiff | tree | snapshot
2009-11-09 martinahansenimproved SAM parser commit | commitdiff | tree | snapshot
2009-11-05 martinahansenfixed KISS align code commit | commitdiff | tree | snapshot
2009-11-04 martinahansencorrected ALIGN implementation commit | commitdiff | tree | snapshot
2009-11-04 martinahansenfixed details in bowtie_seq commit | commitdiff | tree | snapshot
2009-10-30 martinahansenadded read_sam commit | commitdiff | tree | snapshot
2009-10-29 martinahansenfixed bug in patscan_seq commit | commitdiff | tree | snapshot
2009-10-29 martinahansenmodified split_seq commit | commitdiff | tree | snapshot
2009-10-29 martinahansencorrected error message in dir_create commit | commitdiff | tree | snapshot
2009-10-28 martinahansenKISS browser working, but slow commit | commitdiff | tree | snapshot
2009-10-28 martinahansenadded ALIGN view support to KISS commit | commitdiff | tree | snapshot
2009-10-27 martinahansenmore work on KISS commit | commitdiff | tree | snapshot
2009-10-27 martinahansenrevised KISS format commit | commitdiff | tree | snapshot
2009-10-24 martinahansenadded zoom and move to KISS commit | commitdiff | tree | snapshot
2009-10-23 martinahansenremoved jbrowse support commit | commitdiff | tree | snapshot
2009-10-22 martinahansenKISS upgrade commit | commitdiff | tree | snapshot
2009-10-22 martinahansenadded www commit | commitdiff | tree | snapshot
2009-10-21 martinahansenchanged KISS format commit | commitdiff | tree | snapshot
2009-10-21 martinahansenadded upload_to_KISS commit | commitdiff | tree | snapshot
2009-10-21 martinahansenadded kiss biopieces commit | commitdiff | tree | snapshot
2009-10-21 martinahansenfixed dna/DNA bug in Align.pm commit | commitdiff | tree | snapshot
2009-10-19 martinahansenadded XHTML commit | commitdiff | tree | snapshot
2009-10-18 martinahansenadded write_gff commit | commitdiff | tree | snapshot
2009-10-17 martinahansenrenaming create_blast_db to create_blast_index commit | commitdiff | tree | snapshot
2009-10-17 martinahansenchanged options in create_blast_db commit | commitdiff | tree | snapshot
2009-09-30 martinahansenfixed bug in get_genome_seq commit | commitdiff | tree | snapshot
2009-09-29 martinahansenfixed STRAND in SAM format commit | commitdiff | tree | snapshot
2009-09-28 martinahansenadded SAM.pm commit | commitdiff | tree | snapshot
2009-09-28 martinahansenadded bwa_seq commit | commitdiff | tree | snapshot
2009-09-21 martinahansenadded assemble_contigs commit | commitdiff | tree | snapshot
2009-09-21 martinahansenadded format to compute commit | commitdiff | tree | snapshot
2009-09-21 martinahansencleaned up calc_fixedstep commit | commitdiff | tree | snapshot
2009-09-18 martinahansenadded features to calc_fixedstep commit | commitdiff | tree | snapshot
2009-09-18 martinahansenadded strand to assemble_tag_contigs commit | commitdiff | tree | snapshot
2009-09-18 martinahansenadded ugly hack to assemble_tag_contigs commit | commitdiff | tree | snapshot
2009-09-18 martinahansenadded align_two_seq.c commit | commitdiff | tree | snapshot
2009-09-18 martinahansenfixed issue 18 commit | commitdiff | tree | snapshot
2009-09-17 martinahansenadded get_seq commit | commitdiff | tree | snapshot
2009-09-16 martinahansenfixed match_seq bug commit | commitdiff | tree | snapshot
2009-09-09 martinahansenfixed bug in psl2bed conversion commit | commitdiff | tree | snapshot
2009-09-09 martinahansenfixed wrap blunder in Fasta.pm commit | commitdiff | tree | snapshot
2009-09-09 martinahansenadded BED entry output to check_bed commit | commitdiff | tree | snapshot
2009-09-08 martinahansenadded BWA index support commit | commitdiff | tree | snapshot
2009-09-08 martinahansenunfucked bowtie_index commit | commitdiff | tree | snapshot
2009-09-08 martinahansenfuckup commit | commitdiff | tree | snapshot
2009-09-07 martinahansensanitized create_bowtie_index code commit | commitdiff | tree | snapshot
2009-09-07 martinahansensanitized create_bowtie_seq commit | commitdiff | tree | snapshot
2009-09-07 martinahansenfixed solexa/phred code commit | commitdiff | tree | snapshot
2009-09-04 martinahansenchanged options of read_solexa and read_fastq - undocum... commit | commitdiff | tree | snapshot
2009-09-04 martinahansenadded mate_pair_dist commit | commitdiff | tree | snapshot
2009-09-04 martinahansendisabled quality score conversion in FASTQ and Solexa commit | commitdiff | tree | snapshot
2009-09-02 martinahansenfixed issues in fastq handling commit | commitdiff | tree | snapshot
2009-08-28 martinahansenmore work on AlignTwoSeq commit | commitdiff | tree | snapshot
2009-08-27 martinahansenworking on AlignTwoSeq commit | commitdiff | tree | snapshot
2009-08-25 martinahansenfixed cpu switch in bowtie_seq commit | commitdiff | tree | snapshot
2009-08-20 martinahansenfinished rescan_seq commit | commitdiff | tree | snapshot
2009-08-20 martinahansenadded more range to plot_lendist commit | commitdiff | tree | snapshot
2009-08-18 martinahansenupdated rescan_seq commit | commitdiff | tree | snapshot
2009-08-14 martinahansenadded rescan_seq Restriction Enzyme scanner commit | commitdiff | tree | snapshot
2009-08-14 martinahansenpolished RestrictEnz.pm commit | commitdiff | tree | snapshot
2009-08-14 martinahansenadded RestrictEnz.pm commit | commitdiff | tree | snapshot
2009-08-12 martinahansenadded analyze_gc commit | commitdiff | tree | snapshot
2009-08-10 martinahansenadded nifty # detail to read_tab commit | commitdiff | tree | snapshot
2009-08-10 martinahansenadded --logscale_y switch to relevant plot_* biopieces commit | commitdiff | tree | snapshot
2009-08-10 martinahansendisabled utest for C code commit | commitdiff | tree | snapshot
2009-08-10 martinahansenadded --no_gaps switch in blast_seq commit | commitdiff | tree | snapshot
2009-08-04 martinahansenadded a skip_scores switch to read_solexa and read_fastq commit | commitdiff | tree | snapshot
2009-08-02 martinahansenfix embl parser commit | commitdiff | tree | snapshot
2009-08-02 martinahansenfinishing read_embl commit | commitdiff | tree | snapshot
2009-08-02 martinahansenadded get_embl_entry commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/