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biopieces.git
2011-10-14 martinahansenslight change to installer commit | commitdiff | tree | snapshot
2011-10-14 martinahansenadded biopieces installer commit | commitdiff | tree | snapshot
2011-10-14 martinahansenfixed critical missing uc bug in uniq_seq commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixed fastq issue commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixed last of fasta problems commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixed assemblers commit | commitdiff | tree | snapshot
2011-10-13 martinahansenfixing broken biopieces commit | commitdiff | tree | snapshot
2011-10-13 martinahansensmoothed ruby code to get rid of warnings commit | commitdiff | tree | snapshot
2011-10-13 martinahansenbeautifying fasta.rb commit | commitdiff | tree | snapshot
2011-10-13 martinahansenadded Class method Seq.new_bp to seq.rb commit | commitdiff | tree | snapshot
2011-10-13 martinahansenadded to_fastq method seq.rb commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadding tests for write_fastq_files commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded write_fastq_files commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded crufty puts method to fastq.rb commit | commitdiff | tree | snapshot
2011-10-12 martinahansenvariable rename commit | commitdiff | tree | snapshot
2011-10-12 martinahansenevil sort fix needed for assert_no_diff_dir commit | commitdiff | tree | snapshot
2011-10-12 martinahansenfixed .svn dir issue with assert_no_diff_dir commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded tests for write_fasta_files commit | commitdiff | tree | snapshot
2011-10-12 martinahansenfortified test.sh commit | commitdiff | tree | snapshot
2011-10-12 martinahansenfortified assert_no_diff_dir function commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded assert_no_diff_dir function to test code commit | commitdiff | tree | snapshot
2011-10-12 martinahansenadded biopieces write_fasta_files commit | commitdiff | tree | snapshot
2011-10-06 martinahansenfixed alignment descriptors in sam.rb commit | commitdiff | tree | snapshot
2011-10-05 martinahansencleanup commit | commitdiff | tree | snapshot
2011-10-05 martinahansencleanup commit | commitdiff | tree | snapshot
2011-09-29 martinahansenadded delimiter to join_seq commit | commitdiff | tree | snapshot
2011-09-26 martinahansenfixed bug in patscan_seq arguments commit | commitdiff | tree | snapshot
2011-09-23 martinahansenfixed patscan_seq commit | commitdiff | tree | snapshot
2011-09-23 martinahansenremoved bad method from fastq.rb commit | commitdiff | tree | snapshot
2011-09-23 martinahansenfixed mistakes in test_fasta.rb commit | commitdiff | tree | snapshot
2011-09-23 martinahansenfixed newline to rec seperator in seq.rb commit | commitdiff | tree | snapshot
2011-09-20 martinahansenupdated patscan_seq commit | commitdiff | tree | snapshot
2011-09-19 martinahansenfixed grave bug in genbank.rb commit | commitdiff | tree | snapshot
2011-09-07 martinahansenCholhee fixed bug in lowercase_seq commit | commitdiff | tree | snapshot
2011-09-06 martinahansenfixed typo in test_biopieces.rb commit | commitdiff | tree | snapshot
2011-09-06 martinahansenrewrote remove_mids again commit | commitdiff | tree | snapshot
2011-09-06 martinahansenfixed bug in remove_mids commit | commitdiff | tree | snapshot
2011-09-06 martinahansenadded tests to remove_mids commit | commitdiff | tree | snapshot
2011-09-05 martinahansenupdated remove_mids commit | commitdiff | tree | snapshot
2011-09-05 martinahansenadded hamming_distance method to seq.rb commit | commitdiff | tree | snapshot
2011-09-05 martinahansenpolishing on sam.rb commit | commitdiff | tree | snapshot
2011-09-05 martinahansenspeedup of bits.rb commit | commitdiff | tree | snapshot
2011-09-05 martinahansenspeedup of bits.rb commit | commitdiff | tree | snapshot
2011-09-05 martinahansenpolished test_cigar.rb commit | commitdiff | tree | snapshot
2011-09-01 martinahansenfixed bug in find_SNPs commit | commitdiff | tree | snapshot
2011-09-01 martinahansenadded tests for find_SNPs commit | commitdiff | tree | snapshot
2011-09-01 martinahansenadded find_SNPs biopiece commit | commitdiff | tree | snapshot
2011-09-01 martinahansenpolish of cigar.rb commit | commitdiff | tree | snapshot
2011-08-31 martinahansencorrected bug in sam.rb commit | commitdiff | tree | snapshot
2011-08-31 martinahansensam update commit | commitdiff | tree | snapshot
2011-08-31 martinahansenworked on sam - added 1 to phred score check in seq.rb commit | commitdiff | tree | snapshot
2011-08-29 martinahansenadded cigar.rb and test_cigar.rb commit | commitdiff | tree | snapshot
2011-08-29 martinahansenworking on sam.rb commit | commitdiff | tree | snapshot
2011-08-24 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-24 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-24 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-24 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-24 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-24 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-23 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-23 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-23 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-23 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-23 martinahansenworked on unit tests for sam.rb commit | commitdiff | tree | snapshot
2011-08-22 martinahansenworked on sam.rb commit | commitdiff | tree | snapshot
2011-07-04 martinahansens/Checking/Testing commit | commitdiff | tree | snapshot
2011-07-04 martinahansenfixed typo commit | commitdiff | tree | snapshot
2011-07-04 martinahansenfixed typo commit | commitdiff | tree | snapshot
2011-07-04 martinahansenfixed typo commit | commitdiff | tree | snapshot
2011-07-03 martinahansenadded warnings to bp_test commit | commitdiff | tree | snapshot
2011-07-03 martinahansenadded warnings to bp_test commit | commitdiff | tree | snapshot
2011-06-17 martinahansenadded sam.rb to ruby trunk commit | commitdiff | tree | snapshot
2011-06-17 martinahansenadded sam.rb to ruby trunk commit | commitdiff | tree | snapshot
2011-06-15 martinahansenadded tests for rename_keys commit | commitdiff | tree | snapshot
2011-06-15 martinahansenchanged testing log file name commit | commitdiff | tree | snapshot
2011-06-15 martinahansenadded tests for blast_seq_pair commit | commitdiff | tree | snapshot
2011-06-14 martinahansenhackery changes to plot_matches to deal with blast... commit | commitdiff | tree | snapshot
2011-06-14 martinahansenblast_seq_pair polish commit | commitdiff | tree | snapshot
2011-06-14 martinahansenblast_seq_pair polish commit | commitdiff | tree | snapshot
2011-06-14 martinahansenblast_seq_pair polish commit | commitdiff | tree | snapshot
2011-06-14 martinahansenadded blast_seq_pair commit | commitdiff | tree | snapshot
2011-06-13 martinahansenadded Seq.type_guess to ruby code commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for remove_keys commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for remove_indels commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for reverse_seq commit | commitdiff | tree | snapshot
2011-06-08 martinahansenadded tests for complement_seq commit | commitdiff | tree | snapshot
2011-06-06 martinahansenfixed cat_seq commit | commitdiff | tree | snapshot
2011-06-06 martinahansenadded cat_seq biopiece commit | commitdiff | tree | snapshot
2011-06-05 martinahansenshortened messages in test suite commit | commitdiff | tree | snapshot
2011-06-05 martinahansenadded tests for uniq_vals commit | commitdiff | tree | snapshot
2011-06-05 martinahansenadded tests for sort_records commit | commitdiff | tree | snapshot
2011-06-04 martinahansenadded tests for transliterate_vals commit | commitdiff | tree | snapshot
2011-06-04 martinahansenadded tests for transliterate_seq commit | commitdiff | tree | snapshot
2011-06-03 martinahansenadded tests for length_vals commit | commitdiff | tree | snapshot
2011-06-03 martinahansenadded test for calc_bit_scores commit | commitdiff | tree | snapshot
2011-05-31 martinahansenadded assemble_seq_ray commit | commitdiff | tree | snapshot
2011-05-30 martinahansenupgraded mean_scores commit | commitdiff | tree | snapshot
2011-05-30 martinahansenrename switch to something more appropriate commit | commitdiff | tree | snapshot
2011-05-30 martinahansenremoved unused code from find_adaptor commit | commitdiff | tree | snapshot
2011-05-30 martinahansenadded perl module and ruby gem test to bp_test commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/