projects / bamtools.git / shortlog
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
bamtools.git
2011-01-12 derekRemoved explicit keyword from SamHeader-related object... commit | commitdiff | tree | snapshot
2011-01-12 derekUpdate to BamTools API 0.9.2 with exposure of SamHeader... commit | commitdiff | tree | snapshot
2011-01-12 derekAdded explicit copy ctors to SamHeader data structures commit | commitdiff | tree | snapshot
2010-12-24 derekAdded SAM header-handling classes for read/write/validate. commit | commitdiff | tree | snapshot
2010-12-24 derekUpdated to 0.9.1 commit | commitdiff | tree | snapshot
2010-12-24 derekImplemented proper -byname sorting (finally). commit | commitdiff | tree | snapshot
2010-12-24 derekAdded static library to build step. commit | commitdiff | tree | snapshot
2010-12-22 derekMoved BuildCharData() from BamReader to BamAlignment commit | commitdiff | tree | snapshot
2010-12-16 derekFixed: Improper sorting -byname commit | commitdiff | tree | snapshot
2010-12-15 derekAdded creation of include/ folder in bamtools root... commit | commitdiff | tree | snapshot
2010-12-13 derekMinor formatting cleanup commit | commitdiff | tree | snapshot
2010-12-13 derekMade BamAlignment flag queries symmetrical commit | commitdiff | tree | snapshot
2010-12-07 derekFixed: handling BamAlignments with limited char data commit | commitdiff | tree | snapshot
2010-12-06 derekFixed : improper exit code from FilterTool commit | commitdiff | tree | snapshot
2010-12-06 derekFixed: core mode setting for BamMultiReader::Open(... commit | commitdiff | tree | snapshot
2010-12-06 derekAdded new RevertTool to the toolkit commit | commitdiff | tree | snapshot
2010-12-03 derekFixed: bug in the BamReader::Jump() codepath, specifica... commit | commitdiff | tree | snapshot
2010-11-22 derekMoved private implementation API files to internal... commit | commitdiff | tree | snapshot
2010-11-22 derekAdded proper import of bamtools version info from CMake commit | commitdiff | tree | snapshot
2010-11-22 derekFixed BamRegion bug: previously only checked if refID... commit | commitdiff | tree | snapshot
2010-11-19 derekContinued breaking up of monolithic classes: extracted... commit | commitdiff | tree | snapshot
2010-11-19 derekExtracted BamReaderPrivate & BamWriterPrivate from... commit | commitdiff | tree | snapshot
2010-11-19 derekAdded UTILS_EXPORT macro to classes in BamTools utility... commit | commitdiff | tree | snapshot
2010-11-19 derekAdded API_EXPORT macro to classes in BamTools API commit | commitdiff | tree | snapshot
2010-11-19 derekRemoved commented (library export) definitions from... commit | commitdiff | tree | snapshot
2010-11-19 derekMigrated to CMake build system. commit | commitdiff | tree | snapshot
2010-11-18 derekChanged GetNextAlignmentCore() calls to GetNextAlignmen... commit | commitdiff | tree | snapshot
2010-11-15 derekMinor formatting cleanup commit | commitdiff | tree | snapshot
2010-10-27 derekRemoved more non-standard STL calls from BamIndex.cpp commit | commitdiff | tree | snapshot
2010-10-27 derekMerge branch 'master' of git://github.com/ekg/bamtools commit | commitdiff | tree | snapshot
2010-10-27 derekRemoved non-standard stl::map method calls commit | commitdiff | tree | snapshot
2010-10-27 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-10-27 Erik Garrisonclarified no-index behavior in bam multi reader commit | commitdiff | tree | snapshot
2010-10-25 derekUpdated BamTools version information. commit | commitdiff | tree | snapshot
2010-10-24 derekUpdated README commit | commitdiff | tree | snapshot
2010-10-21 DerekMerge branch 'master' of git://github.com/ekg/bamtools commit | commitdiff | tree | snapshot
2010-10-21 DerekUpdating README... still a work in progress commit | commitdiff | tree | snapshot
2010-10-21 Erik Garrisonadd index caching mode setter to BamMultiReader commit | commitdiff | tree | snapshot
2010-10-21 DerekFixed NoIndexCaching behavior commit | commitdiff | tree | snapshot
2010-10-21 DerekMerge branch 'master' of git://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-10-21 DerekImplemented index cache mode for both BAI & BTI formats commit | commitdiff | tree | snapshot
2010-10-21 DerekImplemented index cache mode for both BAI & BTI formats commit | commitdiff | tree | snapshot
2010-10-16 Derekmodified/clarified some help & usage messages commit | commitdiff | tree | snapshot
2010-10-09 DerekChanged BamAlignment::SupportData from private to public. commit | commitdiff | tree | snapshot
2010-10-09 DerekFixed: bug(s) related to empty references and regions. commit | commitdiff | tree | snapshot
2010-10-05 DerekMinor formatting, commenting cleanup commit | commitdiff | tree | snapshot
2010-10-04 derekAdded tag support in filter tool. commit | commitdiff | tree | snapshot
2010-10-04 derekReviewed BAM to YAML conversion contribution (thank... commit | commitdiff | tree | snapshot
2010-09-29 Erik Garrisonconvert: cleanup of prior fix, report if no index file... commit | commitdiff | tree | snapshot
2010-09-29 Erik Garrisonprior commit caused bug with convert commit | commitdiff | tree | snapshot
2010-09-28 Erik Garrisonexposes cigar string data to bamtools filter commit | commitdiff | tree | snapshot
2010-09-28 Erik Garrisonadded reader.Open checks to a number of tools commit | commitdiff | tree | snapshot
2010-09-28 Chase MillerAdded Yaml for outputing BamAlignments. commit | commitdiff | tree | snapshot
2010-09-28 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-09-23 DerekFixed lack of reverse complemented output in BAM -... commit | commitdiff | tree | snapshot
2010-09-23 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-09-22 DerekImplemented 'compound rule' logic in the FilterTool... commit | commitdiff | tree | snapshot
2010-09-20 DerekCleaned up SplitTool internal implementation. Use of... commit | commitdiff | tree | snapshot
2010-09-20 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-09-19 DerekRemoved a backup text file that snuck into an earlier... commit | commitdiff | tree | snapshot
2010-09-19 DerekAdded implementation of new SplitTool. This tool split... commit | commitdiff | tree | snapshot
2010-09-19 DerekAdded GetTagType() to BamAlignment commit | commitdiff | tree | snapshot
2010-09-18 DerekUpdated to match new BamAlignment.h includes commit | commitdiff | tree | snapshot
2010-09-18 DerekMissed api/Makefile in last commit. commit | commitdiff | tree | snapshot
2010-09-18 DerekMoved BamAlignment data structure out to its own .h... commit | commitdiff | tree | snapshot
2010-09-18 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-09-18 DerekFixed: bug related to accessing data (or regions with... commit | commitdiff | tree | snapshot
2010-09-17 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-09-16 DerekOn second thought, moved the (non-indexing) constants... commit | commitdiff | tree | snapshot
2010-09-16 DerekDid some housekeeping in BamAux.h - moved some constant... commit | commitdiff | tree | snapshot
2010-09-16 DerekMissed an update to BamToolsIndex code in a previous... commit | commitdiff | tree | snapshot
2010-09-16 DerekAdded new PileupEngine to the toolkit. This is used... commit | commitdiff | tree | snapshot
2010-09-15 DerekAdded option for users to specifiy half-open (1-based... commit | commitdiff | tree | snapshot
2010-09-13 Erik GarrisonMerge branch 'master' of http://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-09-13 DerekFixed off-by-one error in BamAlignment::GetEndPosition() commit | commitdiff | tree | snapshot
2010-09-11 Erik Garrisonupdated debugging output in BamIndex, seek vs. calculat... commit | commitdiff | tree | snapshot
2010-09-11 Erik GarrisonAdded more verbose debugging output to BamMultiReader... commit | commitdiff | tree | snapshot
2010-09-10 DerekReimplemented BamToolsIndex for bug fix and performance... commit | commitdiff | tree | snapshot
2010-09-10 DerekRemoved debug output statement that slipped into last... commit | commitdiff | tree | snapshot
2010-09-10 DerekReorganizing index/jumping calls. Now all BamReader... commit | commitdiff | tree | snapshot
2010-09-08 Erik Garrisonprefer bamtools index in BamMultiReader commit | commitdiff | tree | snapshot
2010-09-08 Erik GarrisonMerge branch 'master' of git://github.com/pezmaster31... commit | commitdiff | tree | snapshot
2010-09-07 DerekRelicensed the source code used in bamtools_options... commit | commitdiff | tree | snapshot
2010-09-07 DerekDocumentation update commit | commitdiff | tree | snapshot
2010-09-07 DerekAdded -region option to bamtools_merge commit | commitdiff | tree | snapshot
2010-09-07 DerekPreviously missed a line in BamReader.cpp with the... commit | commitdiff | tree | snapshot
2010-09-03 DerekLarge-scale API indexing re-organization: commit | commitdiff | tree | snapshot
2010-09-03 DerekModified Utilities::FileExists() so it doesnt rely... commit | commitdiff | tree | snapshot
2010-09-03 DerekCleaned up index file handling throughout toolkit.... commit | commitdiff | tree | snapshot
2010-09-03 DerekAdded IsIndexLoaded() public method to BamReader. Allow... commit | commitdiff | tree | snapshot
2010-09-02 DerekModified help description for -bti option commit | commitdiff | tree | snapshot
2010-09-01 DerekAdded uncompressed output as default behavior for Filte... commit | commitdiff | tree | snapshot
2010-08-30 DerekPosted implementation of FilterTool. commit | commitdiff | tree | snapshot
2010-08-30 DerekMinor formatting & commenting update commit | commitdiff | tree | snapshot
2010-08-30 DerekUpdated bamtools_utilities with #defines commit | commitdiff | tree | snapshot
2010-08-30 DerekUpdating bamtools_options commit | commitdiff | tree | snapshot
2010-08-30 DerekAdded bamtools_filter_engine.* commit | commitdiff | tree | snapshot
2010-08-30 DerekRemoved -pg debug flag from Makefile CXXFLAGS, accident... commit | commitdiff | tree | snapshot
2010-08-30 DerekForgot to add jsoncpp/json.h in a previous commit commit | commitdiff | tree | snapshot
2010-08-30 DerekFixed: Calls to GetEndPosition() rely on CIGAR data... commit | commitdiff | tree | snapshot
next
Branch of bamtools which has rudimentary Debian packaging