projects / biopieces.git / shortlog
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
biopieces.git
2011-02-03 martinahansencrude polish of shred_seq commit | commitdiff | tree | snapshot
2011-02-02 martinahansenadded echo_yellow to testing code commit | commitdiff | tree | snapshot
2011-02-01 martinahansenadded analyze_assembly biopiece commit | commitdiff | tree | snapshot
2011-02-01 martinahansenadded kmer_freq biopiece and tests commit | commitdiff | tree | snapshot
2011-02-01 martinahansenadded generate_oligos method to seq.rb commit | commitdiff | tree | snapshot
2011-01-31 martinahansenpython update? commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded tests of calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenfixed bug in calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenremove calc_n50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansenremoving calc_N50 commit | commitdiff | tree | snapshot
2011-01-31 martinahansen... argh! commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded calc_N50 biopiece commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadd out accessor to Biopieces ruby code commit | commitdiff | tree | snapshot
2011-01-31 martinahansenrevoking data_out magic commit | commitdiff | tree | snapshot
2011-01-31 martinahansenadded :data_out magic to Biopeices ruby code commit | commitdiff | tree | snapshot
2011-01-30 martinahansenpolished shred_seq commit | commitdiff | tree | snapshot
2011-01-30 martinahansenpolished shred_seq commit | commitdiff | tree | snapshot
2011-01-29 martinahansenfixed bug in shred_seq commit | commitdiff | tree | snapshot
2011-01-29 martinahansenadded shred_seq tests commit | commitdiff | tree | snapshot
2011-01-29 martinahansenadded shred_seq biopiece commit | commitdiff | tree | snapshot
2011-01-29 martinahansenadded version test of perl and ruby commit | commitdiff | tree | snapshot
2011-01-26 martinahansenadded warning in bashrc commit | commitdiff | tree | snapshot
2011-01-23 martinahansenadded Seq#to_key method commit | commitdiff | tree | snapshot
2011-01-22 martinahansenchanged seq names to 0 based in Digest#each commit | commitdiff | tree | snapshot
2011-01-22 martinahansenupdated tests for digest_seq commit | commitdiff | tree | snapshot
2011-01-22 martinahansenadded S_BEG and S_END keys to digest_seq commit | commitdiff | tree | snapshot
2011-01-22 martinahansenfixed missing upcase bug in ruby Seq#Digest::each commit | commitdiff | tree | snapshot
2011-01-20 martinahansenpolish of bitarray.rb commit | commitdiff | tree | snapshot
2011-01-20 martinahansenslight cleanup of find_gaps commit | commitdiff | tree | snapshot
2011-01-17 martinahansenadded tests for find_gaps commit | commitdiff | tree | snapshot
2011-01-17 martinahansenfixed bug in Fasta.pm commit | commitdiff | tree | snapshot
2011-01-14 martinahansenfinishing unit tests for bitarray.rb commit | commitdiff | tree | snapshot
2011-01-14 martinahansenfixed license text commit | commitdiff | tree | snapshot
2011-01-14 martinahansenadded S_LEN to find_gaps commit | commitdiff | tree | snapshot
2011-01-14 martinahansenadded bitarray ruby code commit | commitdiff | tree | snapshot
2011-01-12 martinahansenposished Calc::standard_deviation commit | commitdiff | tree | snapshot
2011-01-10 martinahansenfixed SEQ_LEN bug in transliterate_seq commit | commitdiff | tree | snapshot
2011-01-03 martinahansenmisq updates commit | commitdiff | tree | snapshot
2010-12-31 martinahansenpolishing find_mids commit | commitdiff | tree | snapshot
2010-12-21 martinahansenfixed bug in bwa_seq commit | commitdiff | tree | snapshot
2010-12-17 martinahansenadded contributed biopieces calc_density commit | commitdiff | tree | snapshot
2010-12-16 martinahansenadded min option to find_homopolymers commit | commitdiff | tree | snapshot
2010-12-16 martinahansenspeedup fix of max_homopol again commit | commitdiff | tree | snapshot
2010-12-16 martinahansenspeedup fix of max_homopol commit | commitdiff | tree | snapshot
2010-12-16 martinahansenadded find_homopolymers biopiece commit | commitdiff | tree | snapshot
2010-12-13 martinahansenadded QA_Solexa_report.sh commit | commitdiff | tree | snapshot
2010-12-13 martinahansenadded QA_454_report.sh biopiece script commit | commitdiff | tree | snapshot
2010-12-10 martinahansenadded join_seq biopiece commit | commitdiff | tree | snapshot
2010-12-10 martinahansengenbank.rb fixes commit | commitdiff | tree | snapshot
2010-12-10 martinahansenadded shuffle_records commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed get_seq in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed another locator bug in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed cryptic bug in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed cryptic bug in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansensmall safety add in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed read_genbank tests commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed genbank.rb commit | commitdiff | tree | snapshot
2010-12-08 martinahansenadded read_genbank commit | commitdiff | tree | snapshot
2010-11-24 martinahansenadded tests for translate_seq commit | commitdiff | tree | snapshot
2010-11-24 martinahansenadded tests for uniq_seq commit | commitdiff | tree | snapshot
2010-11-18 martinahansenfixed bug in uclust_seq commit | commitdiff | tree | snapshot
2010-11-18 martinahansenadded --comp switch to uclust_seq commit | commitdiff | tree | snapshot
2010-11-14 martinahansenadding 00README file to code_ruby dir commit | commitdiff | tree | snapshot
2010-11-14 martinahansenadded 00README to bp_test directory commit | commitdiff | tree | snapshot
2010-11-10 martinahansenfixed find_mids to locate even low q mids commit | commitdiff | tree | snapshot
2010-11-09 martinahansenadded roche MID tags to find_mids commit | commitdiff | tree | snapshot
2010-11-02 martinahansenadded find_mids biopiece tests commit | commitdiff | tree | snapshot
2010-11-02 martinahansenfixed bug in find_mids commit | commitdiff | tree | snapshot
2010-11-02 martinahansenadded find_mids biopiece commit | commitdiff | tree | snapshot
2010-11-02 martinahansenfixed bug in clip_seq commit | commitdiff | tree | snapshot
2010-11-02 martinahansenadded clip_seq biopiece commit | commitdiff | tree | snapshot
2010-11-01 martinahansenremoving patscan ruby crap commit | commitdiff | tree | snapshot
2010-11-01 martinahansenadded patfind.rb commit | commitdiff | tree | snapshot
2010-10-31 martinahansenfixed aliases in bashrc commit | commitdiff | tree | snapshot
2010-10-20 martinahansenadded patscan.rb commit | commitdiff | tree | snapshot
2010-10-15 martinahansenpolishing min max sum etc commit | commitdiff | tree | snapshot
2010-10-15 martinahansenpolished sum_vals and added tests commit | commitdiff | tree | snapshot
2010-10-15 martinahansenadded tests for mean_vals commit | commitdiff | tree | snapshot
2010-10-15 martinahansenadd tests for analyze_seq commit | commitdiff | tree | snapshot
2010-10-15 martinahansentrouble shooting buffering problem commit | commitdiff | tree | snapshot
2010-10-14 martinahansenported analyze_seq to ruby commit | commitdiff | tree | snapshot
2010-10-14 martinahansenported analyze_seq to ruby commit | commitdiff | tree | snapshot
2010-10-13 martinahansenfixed scores in bwa_seq commit | commitdiff | tree | snapshot
2010-10-13 martinahansenremoved local logging causing trouble commit | commitdiff | tree | snapshot
2010-10-13 martinahansenfixed SAM.pm qual scores from phred-33 to phred-64 commit | commitdiff | tree | snapshot
2010-10-13 martinahansenchanged bowtie_seq to use phred64 commit | commitdiff | tree | snapshot
2010-10-13 martinahansenpolished read_454 and added tests commit | commitdiff | tree | snapshot
2010-10-13 martinahansenpolished plot_scores commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded align ruby lib commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded fastq ruby lib commit | commitdiff | tree | snapshot
2010-10-12 martinahansenpolished write_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenslight bug fix of write_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded scores_to_dec commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded mask_seq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded solexa switch to read_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded read_fastq and added tests commit | commitdiff | tree | snapshot
2010-10-11 martinahansenupgraded find_genes commit | commitdiff | tree | snapshot
2010-09-28 martinahansenAlignTwoSeq.pm briefly revisited commit | commitdiff | tree | snapshot
next
Mirror (and my branches) of biopieces http://www.biopieces.org/