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mothur.git
2010-06-22 westcottfinished get.relabund command commit | commitdiff | tree | snapshot
2010-06-22 westcottfinished get.relabund command commit | commitdiff | tree | snapshot
2010-06-22 westcottadded mpi code to cluster.split command commit | commitdiff | tree | snapshot
2010-06-22 westcottadded mpi code to cluster.split command commit | commitdiff | tree | snapshot
2010-06-21 westcottadded degap.seqs command commit | commitdiff | tree | snapshot
2010-06-21 westcottmodified chimera commands to process multiple fasta... commit | commitdiff | tree | snapshot
2010-06-18 westcottremoved blast files generated by chimera.slayer, altere... commit | commitdiff | tree | snapshot
2010-06-18 westcottfixed problem with trim.seqs writing over files if... commit | commitdiff | tree | snapshot
2010-06-18 westcottfixed problem with chimera.slayer realigner commit | commitdiff | tree | snapshot
2010-06-17 westcottchanges for 1.11 commit | commitdiff | tree | snapshot
2010-06-17 westcottchanges while testing 1.11 commit | commitdiff | tree | snapshot
2010-06-17 pschlossmade a small mod to the alignment parameters in trim... commit | commitdiff | tree | snapshot
2010-06-16 westcottfixes while testing commit | commitdiff | tree | snapshot
2010-06-15 westcottchanged how we count sequences in a fastafile to allow... commit | commitdiff | tree | snapshot
2010-06-15 westcottchanged how we count sequences in a fastafile to allow... commit | commitdiff | tree | snapshot
2010-06-15 westcottfinal commit before testing 1.11 commit | commitdiff | tree | snapshot
2010-06-14 westcottmodified chop.seqs commit | commitdiff | tree | snapshot
2010-06-14 westcottfixed read.tree so that it can read trees generated... commit | commitdiff | tree | snapshot
2010-06-14 westcottadded fasta method to cluster.split commit | commitdiff | tree | snapshot
2010-06-14 westcottfixed bug in cluster.split commit | commitdiff | tree | snapshot
2010-06-14 westcottfixed pintail bug commit | commitdiff | tree | snapshot
2010-06-12 pschlosspat's mod to trim.seqs commit | commitdiff | tree | snapshot
2010-06-11 westcottfixed bug in cluster.split with classify method commit | commitdiff | tree | snapshot
2010-06-10 westcottcommitting so I can work on the other machine commit | commitdiff | tree | snapshot
2010-06-09 pschlossfixed bug in nast:removeextragaps commit | commitdiff | tree | snapshot
2010-06-09 pschlossadded weightedlinkage.cpp commit | commitdiff | tree | snapshot
2010-06-09 westcottchanges to blastdb to make filenames given to blast... commit | commitdiff | tree | snapshot
2010-06-09 westcottchanges to blastdb to make filenames given to blast... commit | commitdiff | tree | snapshot
2010-06-04 westcottsped up splitting of distance file by 2.5 times by... commit | commitdiff | tree | snapshot
2010-06-03 westcottfixed cluster.split command commit | commitdiff | tree | snapshot
2010-06-02 westcottadded sort parameter to get.otulist commit | commitdiff | tree | snapshot
2010-06-02 westcottadded taxonomy file to list of files list.seqs, get... commit | commitdiff | tree | snapshot
2010-06-02 westcottadded classify.otu command commit | commitdiff | tree | snapshot
2010-06-02 westcottadded classify.otu command commit | commitdiff | tree | snapshot
2010-06-01 westcottchanged the daughterLevels in classifiers summary file... commit | commitdiff | tree | snapshot
2010-06-01 westcottlatest version commit | commitdiff | tree | snapshot
2010-05-28 westcottfinished cluster.split adding classify method. commit | commitdiff | tree | snapshot
2010-05-28 westcottchanged hard parameter in cluster commands commit | commitdiff | tree | snapshot
2010-05-27 westcottfixed project commit | commitdiff | tree | snapshot
2010-05-27 westcottchanges to chop.seqs commit | commitdiff | tree | snapshot
2010-05-26 pschlossfixed bugs with trim.seqs and bdiffs commit | commitdiff | tree | snapshot
2010-05-20 westcott cluster.split command commit | commitdiff | tree | snapshot
2010-05-20 westcottfixed phylip convert for cluster.split command commit | commitdiff | tree | snapshot
2010-05-20 westcottadded cluster.split command commit | commitdiff | tree | snapshot
2010-05-18 westcottadded split.abund comand commit | commitdiff | tree | snapshot
2010-05-17 westcottchange to phylo.diversity to make output = total branch... commit | commitdiff | tree | snapshot
2010-05-14 westcott1.10.0 commit | commitdiff | tree | snapshot
2010-05-12 westcottmodified freq parameter be a percentage of numSeqs... commit | commitdiff | tree | snapshot
2010-05-11 westcottadded clearcut command commit | commitdiff | tree | snapshot
2010-05-10 westcottadded chop.seqs command commit | commitdiff | tree | snapshot
2010-05-10 westcottfixed problem with class.fy.seqs where group totals... commit | commitdiff | tree | snapshot
2010-05-10 westcottadded make.group command commit | commitdiff | tree | snapshot
2010-05-10 westcottworked on trim.seqs commit | commitdiff | tree | snapshot
2010-05-10 westcottworked on trim.seqs commit | commitdiff | tree | snapshot
2010-05-10 pschlosspds - modified strip barcode funcrtion in trimseqscommand commit | commitdiff | tree | snapshot
2010-05-07 westcottchanged confidence scores calculation in bayesian commit | commitdiff | tree | snapshot
2010-05-07 westcottmodified trim.seqs to account for primers of different... commit | commitdiff | tree | snapshot
2010-05-07 westcottadded diffs to trim.seqs commit | commitdiff | tree | snapshot
2010-05-07 westcottworking on trim.seqs commit | commitdiff | tree | snapshot
2010-05-07 westcottchanged groupfile in classify.seqs to reflect multiple... commit | commitdiff | tree | snapshot
2010-05-05 westcottfilled out reference taxonomy with "unclassified" so... commit | commitdiff | tree | snapshot
2010-05-04 westcottenabled ~ commit | commitdiff | tree | snapshot
2010-05-04 westcottfixed bug that caused bayesian cutoff not to work if... commit | commitdiff | tree | snapshot
2010-05-04 westcottadded phylo.diversity command. added hard parameter... commit | commitdiff | tree | snapshot
2010-04-30 westcottmade get.oturep more memory efficient by breaking the... commit | commitdiff | tree | snapshot
2010-04-30 westcottparalellized trim.seqs commit | commitdiff | tree | snapshot
2010-04-29 westcottparalellized summary.seqs and added mpi code to it. commit | commitdiff | tree | snapshot
2010-04-29 westcottparalellized screen.seqs and added mpi code to it.... commit | commitdiff | tree | snapshot
2010-04-28 westcottadded set.logfile command commit | commitdiff | tree | snapshot
2010-04-27 westcottadded name parameter to phylotype command commit | commitdiff | tree | snapshot
2010-04-27 westcottreworked the classifiers summary file added groupfile... commit | commitdiff | tree | snapshot
2010-04-26 westcottmade classifier faster commit | commitdiff | tree | snapshot
2010-04-20 westcotta few modifications for 1.9 commit | commitdiff | tree | snapshot
2010-04-20 westcotta few modifications for 1.9 commit | commitdiff | tree | snapshot
2010-04-17 westcott1.9 commit | commitdiff | tree | snapshot
2010-04-16 westcott1.9 commit | commitdiff | tree | snapshot
2010-04-14 pschlosspat's minor edits to distance calculations commit | commitdiff | tree | snapshot
2010-04-14 westcottsome changes while testing 1.9 commit | commitdiff | tree | snapshot
2010-04-07 westcottadded MPI code, broke up chimera.seqs into 5 separated... commit | commitdiff | tree | snapshot
2010-03-17 westcottfinished mpi for filter.seqs commit | commitdiff | tree | snapshot
2010-03-17 westcotttesting commit | commitdiff | tree | snapshot
2010-03-16 westcottmodified mpi code to save ram by writing out every... commit | commitdiff | tree | snapshot
2010-03-12 westcottadded MPI to dist.seqs command commit | commitdiff | tree | snapshot
2010-03-11 westcotttesting mpi commit | commitdiff | tree | snapshot
2010-03-04 westcottmothur with external build commit | commitdiff | tree | snapshot
2010-03-04 westcottchanges to filter.seqs commit | commitdiff | tree | snapshot
2010-03-03 westcottadded checks for ^C to quit command instead of program commit | commitdiff | tree | snapshot
2010-03-01 westcottadding mothurout.h and .cpp to repo commit | commitdiff | tree | snapshot
2010-02-26 westcottfilter.seqs can now accept multiple fasta files commit | commitdiff | tree | snapshot
2010-02-26 westcottcreated mothurOut class to handle logfiles commit | commitdiff | tree | snapshot
2010-02-25 westcottadded parse.list command commit | commitdiff | tree | snapshot
2010-02-24 westcottfinished chimera changes commit | commitdiff | tree | snapshot
2010-02-23 westcottadded warning about merging with something above cutoff... commit | commitdiff | tree | snapshot
2010-02-23 westcottadded warning about merging with something above cutoff... commit | commitdiff | tree | snapshot
2010-02-22 westcottchimeras, fix to sabundvector and sharedsabundvector... commit | commitdiff | tree | snapshot
2010-02-17 westcottchimeras commit | commitdiff | tree | snapshot
2010-02-16 westcottchimeracode commit | commitdiff | tree | snapshot
2010-02-12 westcottworking on chimeras commit | commitdiff | tree | snapshot
2010-02-04 pschlosstest commit | commitdiff | tree | snapshot
2010-02-04 pschlosspat's ../ bug fix - test commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches