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biopieces.git
2008-11-11 martinahansenswapped bedSort with bed_sort commit | commitdiff | tree | snapshot
2008-11-11 martinahansenadded mysql related Biopieces commit | commitdiff | tree | snapshot
2008-11-07 martinahansenfinished assemble_tag_contigs commit | commitdiff | tree | snapshot
2008-11-03 martinahansenrewrote grab to get speed commit | commitdiff | tree | snapshot
2008-10-28 martinahansenfixed compute commit | commitdiff | tree | snapshot
2008-10-28 martinahansenfixed bug in compute and analyze_seq commit | commitdiff | tree | snapshot
2008-10-27 martinahansenchanged delimiter in REC_TYPE SOLID to ; commit | commitdiff | tree | snapshot
2008-10-02 martinahansenadded REC_TYPE to read_solid commit | commitdiff | tree | snapshot
2008-09-29 martinahansenempty change to Seq.pm commit | commitdiff | tree | snapshot
2008-09-29 martinahansentada commit | commitdiff | tree | snapshot
2008-09-25 martinahansenfixed ugly bug commit | commitdiff | tree | snapshot
2008-09-25 martinahansenfixed rename bug commit | commitdiff | tree | snapshot
2008-09-24 martinahansenadding rescan to bipartite_scan commit | commitdiff | tree | snapshot
2008-09-23 martinahansenfixed STDERR and verbose commit | commitdiff | tree | snapshot
2008-09-23 martinahansenadd bipartite_decode commit | commitdiff | tree | snapshot
2008-09-23 martinahansenadd bipartite_decode commit | commitdiff | tree | snapshot
2008-09-23 martinahansenbackup time commit | commitdiff | tree | snapshot
2008-09-17 martinahansenadded SPAN to read_psl commit | commitdiff | tree | snapshot
2008-09-17 martinahansenfixed tmp dir cleaner in Biopieces.pm commit | commitdiff | tree | snapshot
2008-09-16 martinahansenadded 5prime adaptor feature to remove_adaptor commit | commitdiff | tree | snapshot
2008-09-16 martinahanseninline::c code for adaptor removal commit | commitdiff | tree | snapshot
2008-09-16 martinahansenminor updates commit | commitdiff | tree | snapshot
2008-09-11 martinahansenbed_sort created commit | commitdiff | tree | snapshot
2008-09-11 martinahansenadded bed stuff to c code commit | commitdiff | tree | snapshot
2008-09-10 martinahansenadded copyright to c stuff commit | commitdiff | tree | snapshot
2008-09-10 martinahansenbipartite_scan polish2 commit | commitdiff | tree | snapshot
2008-09-10 martinahansenlinked list sort added commit | commitdiff | tree | snapshot
2008-09-10 martinahansenbipartite_scan polish commit | commitdiff | tree | snapshot
2008-09-08 martinahansenfixed 0 offset bug in remove_adaptor commit | commitdiff | tree | snapshot
2008-09-08 martinahansenadded sort to bipartite_scan.c commit | commitdiff | tree | snapshot
2008-09-05 martinahansenbipartite_scan now working commit | commitdiff | tree | snapshot
2008-09-05 martinahansenadded c temp file dir commit | commitdiff | tree | snapshot
2008-09-05 martinahansenadded unit test to mem.c commit | commitdiff | tree | snapshot
2008-09-04 martinahansenbipartite_scan.c alpha commit | commitdiff | tree | snapshot
2008-09-03 martinahansenremoved wiggle options from upload_to_ucsc commit | commitdiff | tree | snapshot
2008-09-03 martinahansenfixed -S and -L for calc_fixedstep biopiece commit | commitdiff | tree | snapshot
2008-09-03 martinahansenadded calc_fixedstep biopiece commit | commitdiff | tree | snapshot
2008-09-01 martinahansenread_solexa now handles both decimal and octal scores commit | commitdiff | tree | snapshot
2008-08-29 martinahansenfixed bug in remove_adaptor commit | commitdiff | tree | snapshot
2008-08-29 martinahansenfixed minor bugs in remove_adaptor commit | commitdiff | tree | snapshot
2008-08-29 martinahansenadded remove_adaptor biopiece commit | commitdiff | tree | snapshot
2008-08-29 martinahansenadded remove_adaptor biopiece commit | commitdiff | tree | snapshot
2008-08-29 martinahansenfixed UCSC::get_psl_entry commit | commitdiff | tree | snapshot
2008-08-28 martinahansenfix of \r feature in Fasta::get_entry commit | commitdiff | tree | snapshot
2008-08-28 martinahansenread_fasta fix for stupid \r commit | commitdiff | tree | snapshot
2008-08-26 martinahansenfixed bug in table name check commit | commitdiff | tree | snapshot
2008-08-26 martinahansenmade speedup for repeat-O-matic commit | commitdiff | tree | snapshot
2008-08-26 martinahansenadded fixedStep format to upload_to_ucsc commit | commitdiff | tree | snapshot
2008-08-25 martinahansenclean-write of repeat-O-matic commit | commitdiff | tree | snapshot
2008-08-25 martinahansenadded --verbose run option for blast_seq commit | commitdiff | tree | snapshot
2008-08-25 martinahansenadded revcomp_dna to repeat-O-matic commit | commitdiff | tree | snapshot
2008-08-22 martinahansenfixed read_soft to deal with stupid Soft format feature commit | commitdiff | tree | snapshot
2008-08-22 martinahansenadded option to read_soft for selecting specific samples commit | commitdiff | tree | snapshot
2008-08-21 martinahansenfinished c fasta parser commit | commitdiff | tree | snapshot
2008-08-21 martinahansenfinished c fasta parser commit | commitdiff | tree | snapshot
2008-08-21 martinahansenfixed format_genome commit | commitdiff | tree | snapshot
2008-08-21 martinahansenfixed bug in vmatch_index commit | commitdiff | tree | snapshot
2008-08-21 martinahansenfixed %d->%f for log10 in upload_to_ucsc commit | commitdiff | tree | snapshot
2008-08-21 martinahansenmore updates of c and fixes to upload_to_ucsc commit | commitdiff | tree | snapshot
2008-08-18 martinahansenanother c code upgrade commit | commitdiff | tree | snapshot
2008-08-14 martinahansenupdated read_solexa commit | commitdiff | tree | snapshot
2008-08-14 martinahansenunit test of mem.c done commit | commitdiff | tree | snapshot
2008-08-13 martinahansenupdate of c libs commit | commitdiff | tree | snapshot
2008-08-05 martinahansenfixing up c code commit | commitdiff | tree | snapshot
2008-08-01 martinahansenchanged result key of count_records commit | commitdiff | tree | snapshot
2008-07-29 martinahansenreverted code for format_genome in order to make vmatch... commit | commitdiff | tree | snapshot
2008-07-29 martinahansencorrecting bug in Match.pm commit | commitdiff | tree | snapshot
2008-07-29 martinahansenfinished biopiece merge_records commit | commitdiff | tree | snapshot
2008-07-28 martinahansenadded new biopiece merge_records commit | commitdiff | tree | snapshot
2008-07-25 martinahansenfixed zero entry tmp file bug in soap_seq commit | commitdiff | tree | snapshot
2008-07-25 martinahansenfixed another annoying bug in clean_tmp() commit | commitdiff | tree | snapshot
2008-07-25 martinahansencorrected bug in clean tmp to deal with permision problem commit | commitdiff | tree | snapshot
2008-07-25 martinahansenchanged error output to fit on screen commit | commitdiff | tree | snapshot
2008-07-24 martinahansenadded seed_size to soap_seq commit | commitdiff | tree | snapshot
2008-07-24 martinahansencorrected ugly bug commit | commitdiff | tree | snapshot
2008-07-24 martinahansenfixed cleanup of temporary files commit | commitdiff | tree | snapshot
2008-07-23 martinahansenbegin of status update commit | commitdiff | tree | snapshot
2008-07-22 martinahansenadded record2fasta to allow for aliasing of SEQ_NAME... commit | commitdiff | tree | snapshot
2008-07-21 martinahansenupdated upload_to_ucsc wiki and added a secure free... commit | commitdiff | tree | snapshot
2008-07-21 martinahansenfixed ugly bug in get_record commit | commitdiff | tree | snapshot
2008-07-21 martinahansencorrected an ugly bug in get_record commit | commitdiff | tree | snapshot
2008-07-21 martinahansenmore soap_seq debugging commit | commitdiff | tree | snapshot
2008-07-21 martinahansendebugging soap_seq commit | commitdiff | tree | snapshot
2008-07-21 martinahansenadded soap_seq commit | commitdiff | tree | snapshot
2008-07-21 martinahansenchanged wib dir from BP_DATA to ~/ucsc commit | commitdiff | tree | snapshot
2008-07-21 martinahansenupdated list_genomes wiki and bashrc commit | commitdiff | tree | snapshot
2008-07-21 martinahansenfixed local and global logging commit | commitdiff | tree | snapshot
2008-07-20 martinahansenadded a variable argument list example to c scr commit | commitdiff | tree | snapshot
2008-07-20 martinahansencleaning c source dir commit | commitdiff | tree | snapshot
2008-07-17 martinahansenfixing bashrc commit | commitdiff | tree | snapshot
2008-07-17 martinahansenfixing bashrc commit | commitdiff | tree | snapshot
2008-07-17 martinahansenremoved bp_usage dir from source trunk (should be root... commit | commitdiff | tree | snapshot
2008-07-17 martinahansenunmessing wiki dir commit | commitdiff | tree | snapshot
2008-07-17 martinahansencleaning bp_usage commit | commitdiff | tree | snapshot
2008-07-17 martinahansencleaning bp_usage commit | commitdiff | tree | snapshot
2008-07-17 martinahansencleaning bp_usage commit | commitdiff | tree | snapshot
2008-07-17 martinahansenformat_genome fix commit | commitdiff | tree | snapshot
2008-07-17 martinahansenremoved log directory commit | commitdiff | tree | snapshot
2008-07-14 martinahansenadded phastcons to format_genome commit | commitdiff | tree | snapshot
2008-07-14 martinahansenremoved create_fixedstep_index commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/