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biopieces.git
2011-01-10 martinahansenfixed SEQ_LEN bug in transliterate_seq commit | commitdiff | tree | snapshot
2011-01-03 martinahansenmisq updates commit | commitdiff | tree | snapshot
2010-12-31 martinahansenpolishing find_mids commit | commitdiff | tree | snapshot
2010-12-21 martinahansenfixed bug in bwa_seq commit | commitdiff | tree | snapshot
2010-12-17 martinahansenadded contributed biopieces calc_density commit | commitdiff | tree | snapshot
2010-12-16 martinahansenadded min option to find_homopolymers commit | commitdiff | tree | snapshot
2010-12-16 martinahansenspeedup fix of max_homopol again commit | commitdiff | tree | snapshot
2010-12-16 martinahansenspeedup fix of max_homopol commit | commitdiff | tree | snapshot
2010-12-16 martinahansenadded find_homopolymers biopiece commit | commitdiff | tree | snapshot
2010-12-13 martinahansenadded QA_Solexa_report.sh commit | commitdiff | tree | snapshot
2010-12-13 martinahansenadded QA_454_report.sh biopiece script commit | commitdiff | tree | snapshot
2010-12-10 martinahansenadded join_seq biopiece commit | commitdiff | tree | snapshot
2010-12-10 martinahansengenbank.rb fixes commit | commitdiff | tree | snapshot
2010-12-10 martinahansenadded shuffle_records commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed get_seq in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed another locator bug in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed cryptic bug in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed cryptic bug in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansensmall safety add in genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed read_genbank tests commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed genbank.rb commit | commitdiff | tree | snapshot
2010-12-09 martinahansenfixed genbank.rb commit | commitdiff | tree | snapshot
2010-12-08 martinahansenadded read_genbank commit | commitdiff | tree | snapshot
2010-11-24 martinahansenadded tests for translate_seq commit | commitdiff | tree | snapshot
2010-11-24 martinahansenadded tests for uniq_seq commit | commitdiff | tree | snapshot
2010-11-18 martinahansenfixed bug in uclust_seq commit | commitdiff | tree | snapshot
2010-11-18 martinahansenadded --comp switch to uclust_seq commit | commitdiff | tree | snapshot
2010-11-14 martinahansenadding 00README file to code_ruby dir commit | commitdiff | tree | snapshot
2010-11-14 martinahansenadded 00README to bp_test directory commit | commitdiff | tree | snapshot
2010-11-10 martinahansenfixed find_mids to locate even low q mids commit | commitdiff | tree | snapshot
2010-11-09 martinahansenadded roche MID tags to find_mids commit | commitdiff | tree | snapshot
2010-11-02 martinahansenadded find_mids biopiece tests commit | commitdiff | tree | snapshot
2010-11-02 martinahansenfixed bug in find_mids commit | commitdiff | tree | snapshot
2010-11-02 martinahansenadded find_mids biopiece commit | commitdiff | tree | snapshot
2010-11-02 martinahansenfixed bug in clip_seq commit | commitdiff | tree | snapshot
2010-11-02 martinahansenadded clip_seq biopiece commit | commitdiff | tree | snapshot
2010-11-01 martinahansenremoving patscan ruby crap commit | commitdiff | tree | snapshot
2010-11-01 martinahansenadded patfind.rb commit | commitdiff | tree | snapshot
2010-10-31 martinahansenfixed aliases in bashrc commit | commitdiff | tree | snapshot
2010-10-20 martinahansenadded patscan.rb commit | commitdiff | tree | snapshot
2010-10-15 martinahansenpolishing min max sum etc commit | commitdiff | tree | snapshot
2010-10-15 martinahansenpolished sum_vals and added tests commit | commitdiff | tree | snapshot
2010-10-15 martinahansenadded tests for mean_vals commit | commitdiff | tree | snapshot
2010-10-15 martinahansenadd tests for analyze_seq commit | commitdiff | tree | snapshot
2010-10-15 martinahansentrouble shooting buffering problem commit | commitdiff | tree | snapshot
2010-10-14 martinahansenported analyze_seq to ruby commit | commitdiff | tree | snapshot
2010-10-14 martinahansenported analyze_seq to ruby commit | commitdiff | tree | snapshot
2010-10-13 martinahansenfixed scores in bwa_seq commit | commitdiff | tree | snapshot
2010-10-13 martinahansenremoved local logging causing trouble commit | commitdiff | tree | snapshot
2010-10-13 martinahansenfixed SAM.pm qual scores from phred-33 to phred-64 commit | commitdiff | tree | snapshot
2010-10-13 martinahansenchanged bowtie_seq to use phred64 commit | commitdiff | tree | snapshot
2010-10-13 martinahansenpolished read_454 and added tests commit | commitdiff | tree | snapshot
2010-10-13 martinahansenpolished plot_scores commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded align ruby lib commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded fastq ruby lib commit | commitdiff | tree | snapshot
2010-10-12 martinahansenpolished write_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenslight bug fix of write_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded scores_to_dec commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded mask_seq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenadded solexa switch to read_fastq commit | commitdiff | tree | snapshot
2010-10-12 martinahansenupgraded read_fastq and added tests commit | commitdiff | tree | snapshot
2010-10-11 martinahansenupgraded find_genes commit | commitdiff | tree | snapshot
2010-09-28 martinahansenAlignTwoSeq.pm briefly revisited commit | commitdiff | tree | snapshot
2010-09-28 martinahansenfixed indentation in perl code commit | commitdiff | tree | snapshot
2010-09-23 martinahansencleanup of uclust_seq commit | commitdiff | tree | snapshot
2010-09-22 martinahansenpolishing on uclust_seq commit | commitdiff | tree | snapshot
2010-09-21 martinahansenadded uclust_seq Biopiece - Work in progress! commit | commitdiff | tree | snapshot
2010-09-20 martinahansenfixed typo in text in digest_seq commit | commitdiff | tree | snapshot
2010-09-20 martinahansenfixes and test for digest_seq commit | commitdiff | tree | snapshot
2010-09-20 martinahansenadded digest_seq Biopiece commit | commitdiff | tree | snapshot
2010-09-17 martinahansenadded Digest class to ruby code commit | commitdiff | tree | snapshot
2010-09-16 martinahansenadded pcr_seq Biopiece commit | commitdiff | tree | snapshot
2010-09-16 martinahansenadded reverse method to ruby Seq class commit | commitdiff | tree | snapshot
2010-09-13 martinahansenadded bin_vals biopiece and tests commit | commitdiff | tree | snapshot
2010-09-09 martinahansenported length_seq to ruby commit | commitdiff | tree | snapshot
2010-09-09 martinahansenfixing length_seq commit | commitdiff | tree | snapshot
2010-09-09 martinahansenadded Ruby version check commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of trailing newline in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of trailing newline in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of trailing newline in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenslight fix of printf in progress_meter commit | commitdiff | tree | snapshot
2010-09-09 martinahansenadded progress_meter biopiece commit | commitdiff | tree | snapshot
2010-09-08 martinahansenfixed minor bug in write_align of pairwise protein... commit | commitdiff | tree | snapshot
2010-09-02 martinahansenadded scores_to_dec biopiece, wiki, and tests commit | commitdiff | tree | snapshot
2010-09-01 martinahansenreverting ruby unit test to old school commit | commitdiff | tree | snapshot
2010-09-01 martinahansenadded tests for mask_seq commit | commitdiff | tree | snapshot
2010-09-01 martinahansenadded mask_seq biopiece commit | commitdiff | tree | snapshot
2010-09-01 martinahansenreplaced option keys from strings to symbols in ruby... commit | commitdiff | tree | snapshot
2010-08-20 martinahansenshifted ruby biopiece records to use symbols instead... commit | commitdiff | tree | snapshot
2010-08-18 martinahansenadded zip reading to read_fasta commit | commitdiff | tree | snapshot
2010-08-18 martinahansenread_fasta now reads zipped fasta fails again commit | commitdiff | tree | snapshot
2010-08-17 martinahansenupdating test_read_fasta commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-17 martinahansenreplacing read_fasta with ruby version commit | commitdiff | tree | snapshot
2010-08-16 martinahansenupdating seq.rb commit | commitdiff | tree | snapshot
2010-08-16 martinahansenupdateing seq.rb commit | commitdiff | tree | snapshot
2010-08-13 martinahansenfixed type bug in ruby code commit | commitdiff | tree | snapshot
2010-08-12 martinahansenpolishing testing suite commit | commitdiff | tree | snapshot
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Mirror (and my branches) of biopieces http://www.biopieces.org/