projects / mothur.git / shortlog
? search:
summary | shortlog | log | commit | commitdiff | tree
first ⋅ prev ⋅ next
mothur.git
2012-09-11 Sarah Westcottadded count file to get.groups and remove.groups. added... commit | commitdiff | tree | snapshot
2012-09-07 Sarah Westcottmajor change to the tree class to use the count table... commit | commitdiff | tree | snapshot
2012-08-24 Sarah Westcottadded sff.multiple command. fixed issue with windows... commit | commitdiff | tree | snapshot
2012-08-21 Sarah Westcottadded oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs... commit | commitdiff | tree | snapshot
2012-08-14 Sarah Westcottadded code to format fast files for uchime. started... commit | commitdiff | tree | snapshot
2012-08-13 Sarah Westcottadded count file to chimera.uchime. found issue with... commit | commitdiff | tree | snapshot
2012-08-08 Sarah Westcottadded count parameter to chimera.slayer command commit | commitdiff | tree | snapshot
2012-08-08 Sarah Westcottadded SequenceCountParser class to parse the count... commit | commitdiff | tree | snapshot
2012-08-06 Sarah Westcottchanges while testing 1.27 commit | commitdiff | tree | snapshot
2012-08-01 Sarah Westcottparalellized chop.seqs commit | commitdiff | tree | snapshot
2012-07-31 Sarah Westcottadded count file to cluster.classic and cluster.split... commit | commitdiff | tree | snapshot
2012-07-30 Sarah Westcottfixed subsample name file name issue. added count... commit | commitdiff | tree | snapshot
2012-07-27 Sarah Westcottadded sparseDistanceMatrix class. Modified cluster... commit | commitdiff | tree | snapshot
2012-07-11 Sarah Westcottworking on adding count file to mgcluster commit | commitdiff | tree | snapshot
2012-07-11 Sarah Westcottworking on mgcluster count file change commit | commitdiff | tree | snapshot
2012-07-11 Sarah WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2012-07-11 Sarah Westcottadded debug statements to trim.seqs commit | commitdiff | tree | snapshot
2012-07-11 Kathryn Iversonmerged mgcluster. kw files added, but not working in... commit | commitdiff | tree | snapshot
2012-07-10 Sarah Westcottchanges while testing 1.26 commit | commitdiff | tree | snapshot
2012-07-03 Kathryn Iversonfixed pointers in mgcluster commit | commitdiff | tree | snapshot
2012-07-03 Kathryn Iversonfixed kw parameter types commit | commitdiff | tree | snapshot
2012-07-03 Kathryn Iversonupdated mgcluster to take count file commit | commitdiff | tree | snapshot
2012-07-03 Kathryn Iversonupdated parameters for kw commit | commitdiff | tree | snapshot
2012-07-03 Kathryn IversonMerge branch 'master' of https://github.com/mothur... commit | commitdiff | tree | snapshot
2012-07-03 Sarah Westcottchanges while testing 1.26 commit | commitdiff | tree | snapshot
2012-07-02 Kathryn Iversonupdated getgroupnames commit | commitdiff | tree | snapshot
2012-07-02 kdiversonfixed io commit | commitdiff | tree | snapshot
2012-07-02 kdiversoncleaned up code2 commit | commitdiff | tree | snapshot
2012-06-29 kdiversoncleaned up code commit | commitdiff | tree | snapshot
2012-06-29 kiversonremoved comments commit | commitdiff | tree | snapshot
2012-06-28 Kathryn Iversonupdated kruskalwallis struct commit | commitdiff | tree | snapshot
2012-06-28 Kathryn Iversonupdated kruskalwallis struct commit | commitdiff | tree | snapshot
2012-06-28 Sarah Westcottadded countable class to read and store count file... commit | commitdiff | tree | snapshot
2012-06-28 Kathryn Iversonupdated kruskalwallis command commit | commitdiff | tree | snapshot
2012-06-26 Kathryn Iversonadded kruskalwallis command commit | commitdiff | tree | snapshot
2012-06-26 Sarah WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2012-06-26 Sarah Westcottmade make.table alias to count.seqs command. added... commit | commitdiff | tree | snapshot
2012-06-26 Kathryn Iversonremoved print statements from testing commit | commitdiff | tree | snapshot
2012-06-22 Kathryn Iversonadded large parameter to mgcluster along with new rabun... commit | commitdiff | tree | snapshot
2012-06-22 kiversonremoved comments commit | commitdiff | tree | snapshot
2012-06-21 Kathryn Iversonedited createRabund function commit | commitdiff | tree | snapshot
2012-06-20 Kathryn Iversonedited createRabund function commit | commitdiff | tree | snapshot
2012-06-20 Kathryn Iversonadded createRabund function to mgcluster commit | commitdiff | tree | snapshot
2012-06-20 Kathryn Iversonadded ifelse for rabund commit | commitdiff | tree | snapshot
2012-06-20 Kathryn Iversontesting new devel branch commit | commitdiff | tree | snapshot
2012-06-19 Sarah Westcottadded phylip as output file type for commands that... commit | commitdiff | tree | snapshot
2012-06-19 Sarah Westcottadded load.logfile command. changed summary.single... commit | commitdiff | tree | snapshot
2012-06-12 Sarah Westcottchanged reading of name file to use buffered reads... commit | commitdiff | tree | snapshot
2012-06-11 Sarah Westcottfixed bug with dist.shared subsampling. added mode... commit | commitdiff | tree | snapshot
2012-06-05 Sarah Westcottadded forward and reverse barcodes to trim.seqs to... commit | commitdiff | tree | snapshot
2012-06-04 Sarah Westcottfixed classify.seqs output file name - had issue if... commit | commitdiff | tree | snapshot
2012-06-04 Sarah Westcottadded check to make sure shhh.flows child processes... commit | commitdiff | tree | snapshot
2012-05-29 Sarah Westcottadded code to check path for uchime and catchall execut... commit | commitdiff | tree | snapshot
2012-05-24 Sarah Westcottforced rarefaction.single to output ending line for... commit | commitdiff | tree | snapshot
2012-05-24 Sarah Westcottfixed bug in sffinfo when ~ was used in the sff filenam... commit | commitdiff | tree | snapshot
2012-05-23 Sarah Westcottadded metadata parameter to otu.association commit | commitdiff | tree | snapshot
2012-05-23 Sarah Westcottadded design and sets parameters to the rarefaction... commit | commitdiff | tree | snapshot
2012-05-22 Sarah Westcottadded debug output classify.seqs. worked on make.contig... commit | commitdiff | tree | snapshot
2012-05-21 Sarah Westcottadded get.otulabels and remove.otulabels commands per... commit | commitdiff | tree | snapshot
2012-05-18 Sarah Westcottadded threshold parameter to make.contigs command. commit | commitdiff | tree | snapshot
2012-05-18 Sarah WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2012-05-18 Sarah Westcottadded check to cluster.classic to make sure file type... commit | commitdiff | tree | snapshot
2012-05-16 Kathryn Iversonadded check for numOTUS, will skip if < 2. commit | commitdiff | tree | snapshot
2012-05-16 Kathryn IversonMerge branch 'master' of https://github.com/mothur... commit | commitdiff | tree | snapshot
2012-05-16 Kathryn Iversonupdated output to include standard deviation commit | commitdiff | tree | snapshot
2012-05-16 Kathryn Iversonreplaced p-value with zscore for lookup in ztable. commit | commitdiff | tree | snapshot
2012-05-16 Sarah Westcottadded classic parameter to cluster.split. working... commit | commitdiff | tree | snapshot
2012-05-15 Kathryn Iversonadded functions to calculate standard deviation and... commit | commitdiff | tree | snapshot
2012-05-15 Sarah Westcottadded list.labels command. started work on make.contigs... commit | commitdiff | tree | snapshot
2012-05-14 Sarah Westcottlast checkin for 1.25.1 commit | commitdiff | tree | snapshot
2012-05-14 Sarah Westcottfixed bug in make.biom that occurred if some taxonomies... commit | commitdiff | tree | snapshot
2012-05-14 Sarah WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2012-05-14 Sarah Westcottadded debug info to engines function to get mother... commit | commitdiff | tree | snapshot
2012-05-14 John Westcotttrying to clean up project files path issues commit | commitdiff | tree | snapshot
2012-05-14 Pat Schlossfixing pbxproj commit | commitdiff | tree | snapshot
2012-05-14 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-05-14 Pat Schlosssmall mods to sensspec command commit | commitdiff | tree | snapshot
2012-05-11 Sarah Westcottadded some debug stuff to chimera.uchime. optimized... commit | commitdiff | tree | snapshot
2012-05-11 Sarah Westcottfixed path redirect issue in shhh.flows. optimized... commit | commitdiff | tree | snapshot
2012-05-10 Sarah Westcottfixed typos commit | commitdiff | tree | snapshot
2012-05-10 Sarah Westcottadded abundance and sample parameters to get.coremicrob... commit | commitdiff | tree | snapshot
2012-05-09 Sarah Westcottworking on get.coremicrobiom commit | commitdiff | tree | snapshot
2012-05-09 John WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2012-05-09 John Westcottadded debug flag to mothurOut. added debug parameter... commit | commitdiff | tree | snapshot
2012-05-09 Sarah Westcottcluster.split split method defaults to classify if... commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottfixed segfault in unifrac with subsample. in progress... commit | commitdiff | tree | snapshot
2012-05-02 Sarah WestcottRevert to previous commit commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottfixing commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottmoving source to source folder commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottmoved mothur's source into a folder to make grabbing... commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottremoving chime source files from mother project. commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottanother test commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcotttest2 commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcotttest commit commit | commitdiff | tree | snapshot
2012-05-01 John Westcottcommit test commit | commitdiff | tree | snapshot
2012-05-01 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-05-01 Pat Schlossfix rarefaction.single commit | commitdiff | tree | snapshot
2012-05-01 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-05-01 Sarah Westcottbug in dist.shared and tree.shared with new subsampling... commit | commitdiff | tree | snapshot
2012-05-01 Kathryn Iversonfixed sim9 and trial_swap commit | commitdiff | tree | snapshot
next
Mothur--16S microbiota sequencing software; mirror of main repository with my branches