git.donarmstrong.com Git - mothur.git/shortlog

]> git.donarmstrong.com Git - mothur.git/shortlog

2012-09-11	Sarah Westcott	added count file to get.groups and remove.groups. added...	commit \| commitdiff \| tree \| snapshot
2012-09-07	Sarah Westcott	major change to the tree class to use the count table...	commit \| commitdiff \| tree \| snapshot
2012-08-24	Sarah Westcott	added sff.multiple command. fixed issue with windows...	commit \| commitdiff \| tree \| snapshot
2012-08-21	Sarah Westcott	added oligos, pdiffs, bdiffs, ldiffs, sdiffs, tiffs...	commit \| commitdiff \| tree \| snapshot
2012-08-14	Sarah Westcott	added code to format fast files for uchime. started...	commit \| commitdiff \| tree \| snapshot
2012-08-13	Sarah Westcott	added count file to chimera.uchime. found issue with...	commit \| commitdiff \| tree \| snapshot
2012-08-08	Sarah Westcott	added count parameter to chimera.slayer command	commit \| commitdiff \| tree \| snapshot
2012-08-08	Sarah Westcott	added SequenceCountParser class to parse the count...	commit \| commitdiff \| tree \| snapshot
2012-08-06	Sarah Westcott	changes while testing 1.27	commit \| commitdiff \| tree \| snapshot
2012-08-01	Sarah Westcott	paralellized chop.seqs	commit \| commitdiff \| tree \| snapshot
2012-07-31	Sarah Westcott	added count file to cluster.classic and cluster.split...	commit \| commitdiff \| tree \| snapshot
2012-07-30	Sarah Westcott	fixed subsample name file name issue. added count...	commit \| commitdiff \| tree \| snapshot
2012-07-27	Sarah Westcott	added sparseDistanceMatrix class. Modified cluster...	commit \| commitdiff \| tree \| snapshot
2012-07-11	Sarah Westcott	working on adding count file to mgcluster	commit \| commitdiff \| tree \| snapshot
2012-07-11	Sarah Westcott	working on mgcluster count file change	commit \| commitdiff \| tree \| snapshot
2012-07-11	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-07-11	Sarah Westcott	added debug statements to trim.seqs	commit \| commitdiff \| tree \| snapshot
2012-07-11	Kathryn Iverson	merged mgcluster. kw files added, but not working in...	commit \| commitdiff \| tree \| snapshot
2012-07-10	Sarah Westcott	changes while testing 1.26	commit \| commitdiff \| tree \| snapshot
2012-07-03	Kathryn Iverson	fixed pointers in mgcluster	commit \| commitdiff \| tree \| snapshot
2012-07-03	Kathryn Iverson	fixed kw parameter types	commit \| commitdiff \| tree \| snapshot
2012-07-03	Kathryn Iverson	updated mgcluster to take count file	commit \| commitdiff \| tree \| snapshot
2012-07-03	Kathryn Iverson	updated parameters for kw	commit \| commitdiff \| tree \| snapshot
2012-07-03	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	commit \| commitdiff \| tree \| snapshot
2012-07-03	Sarah Westcott	changes while testing 1.26	commit \| commitdiff \| tree \| snapshot
2012-07-02	Kathryn Iverson	updated getgroupnames	commit \| commitdiff \| tree \| snapshot
2012-07-02	kdiverson	fixed io	commit \| commitdiff \| tree \| snapshot
2012-07-02	kdiverson	cleaned up code2	commit \| commitdiff \| tree \| snapshot
2012-06-29	kdiverson	cleaned up code	commit \| commitdiff \| tree \| snapshot
2012-06-29	kiverson	removed comments	commit \| commitdiff \| tree \| snapshot
2012-06-28	Kathryn Iverson	updated kruskalwallis struct	commit \| commitdiff \| tree \| snapshot
2012-06-28	Kathryn Iverson	updated kruskalwallis struct	commit \| commitdiff \| tree \| snapshot
2012-06-28	Sarah Westcott	added countable class to read and store count file...	commit \| commitdiff \| tree \| snapshot
2012-06-28	Kathryn Iverson	updated kruskalwallis command	commit \| commitdiff \| tree \| snapshot
2012-06-26	Kathryn Iverson	added kruskalwallis command	commit \| commitdiff \| tree \| snapshot
2012-06-26	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-06-26	Sarah Westcott	made make.table alias to count.seqs command. added...	commit \| commitdiff \| tree \| snapshot
2012-06-26	Kathryn Iverson	removed print statements from testing	commit \| commitdiff \| tree \| snapshot
2012-06-22	Kathryn Iverson	added large parameter to mgcluster along with new rabun...	commit \| commitdiff \| tree \| snapshot
2012-06-22	kiverson	removed comments	commit \| commitdiff \| tree \| snapshot
2012-06-21	Kathryn Iverson	edited createRabund function	commit \| commitdiff \| tree \| snapshot
2012-06-20	Kathryn Iverson	edited createRabund function	commit \| commitdiff \| tree \| snapshot
2012-06-20	Kathryn Iverson	added createRabund function to mgcluster	commit \| commitdiff \| tree \| snapshot
2012-06-20	Kathryn Iverson	added ifelse for rabund	commit \| commitdiff \| tree \| snapshot
2012-06-20	Kathryn Iverson	testing new devel branch	commit \| commitdiff \| tree \| snapshot
2012-06-19	Sarah Westcott	added phylip as output file type for commands that...	commit \| commitdiff \| tree \| snapshot
2012-06-19	Sarah Westcott	added load.logfile command. changed summary.single...	commit \| commitdiff \| tree \| snapshot
2012-06-12	Sarah Westcott	changed reading of name file to use buffered reads...	commit \| commitdiff \| tree \| snapshot
2012-06-11	Sarah Westcott	fixed bug with dist.shared subsampling. added mode...	commit \| commitdiff \| tree \| snapshot
2012-06-05	Sarah Westcott	added forward and reverse barcodes to trim.seqs to...	commit \| commitdiff \| tree \| snapshot
2012-06-04	Sarah Westcott	fixed classify.seqs output file name - had issue if...	commit \| commitdiff \| tree \| snapshot
2012-06-04	Sarah Westcott	added check to make sure shhh.flows child processes...	commit \| commitdiff \| tree \| snapshot
2012-05-29	Sarah Westcott	added code to check path for uchime and catchall execut...	commit \| commitdiff \| tree \| snapshot
2012-05-24	Sarah Westcott	forced rarefaction.single to output ending line for...	commit \| commitdiff \| tree \| snapshot
2012-05-24	Sarah Westcott	fixed bug in sffinfo when ~ was used in the sff filenam...	commit \| commitdiff \| tree \| snapshot
2012-05-23	Sarah Westcott	added metadata parameter to otu.association	commit \| commitdiff \| tree \| snapshot
2012-05-23	Sarah Westcott	added design and sets parameters to the rarefaction...	commit \| commitdiff \| tree \| snapshot
2012-05-22	Sarah Westcott	added debug output classify.seqs. worked on make.contig...	commit \| commitdiff \| tree \| snapshot
2012-05-21	Sarah Westcott	added get.otulabels and remove.otulabels commands per...	commit \| commitdiff \| tree \| snapshot
2012-05-18	Sarah Westcott	added threshold parameter to make.contigs command.	commit \| commitdiff \| tree \| snapshot
2012-05-18	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-05-18	Sarah Westcott	added check to cluster.classic to make sure file type...	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	added check for numOTUS, will skip if < 2.	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	Merge branch 'master' of https://github.com/mothur...	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	updated output to include standard deviation	commit \| commitdiff \| tree \| snapshot
2012-05-16	Kathryn Iverson	replaced p-value with zscore for lookup in ztable.	commit \| commitdiff \| tree \| snapshot
2012-05-16	Sarah Westcott	added classic parameter to cluster.split. working...	commit \| commitdiff \| tree \| snapshot
2012-05-15	Kathryn Iverson	added functions to calculate standard deviation and...	commit \| commitdiff \| tree \| snapshot
2012-05-15	Sarah Westcott	added list.labels command. started work on make.contigs...	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	last checkin for 1.25.1	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	fixed bug in make.biom that occurred if some taxonomies...	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-05-14	Sarah Westcott	added debug info to engines function to get mother...	commit \| commitdiff \| tree \| snapshot
2012-05-14	John Westcott	trying to clean up project files path issues	commit \| commitdiff \| tree \| snapshot
2012-05-14	Pat Schloss	fixing pbxproj	commit \| commitdiff \| tree \| snapshot
2012-05-14	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-14	Pat Schloss	small mods to sensspec command	commit \| commitdiff \| tree \| snapshot
2012-05-11	Sarah Westcott	added some debug stuff to chimera.uchime. optimized...	commit \| commitdiff \| tree \| snapshot
2012-05-11	Sarah Westcott	fixed path redirect issue in shhh.flows. optimized...	commit \| commitdiff \| tree \| snapshot
2012-05-10	Sarah Westcott	fixed typos	commit \| commitdiff \| tree \| snapshot
2012-05-10	Sarah Westcott	added abundance and sample parameters to get.coremicrob...	commit \| commitdiff \| tree \| snapshot
2012-05-09	Sarah Westcott	working on get.coremicrobiom	commit \| commitdiff \| tree \| snapshot
2012-05-09	John Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-05-09	John Westcott	added debug flag to mothurOut. added debug parameter...	commit \| commitdiff \| tree \| snapshot
2012-05-09	Sarah Westcott	cluster.split split method defaults to classify if...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	fixed segfault in unifrac with subsample. in progress...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	Revert to previous commit	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	fixing	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	moving source to source folder	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	removing chime source files from mother project.	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	another test	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	test2	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	test commit	commit \| commitdiff \| tree \| snapshot
2012-05-01	John Westcott	commit test	commit \| commitdiff \| tree \| snapshot
2012-05-01	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Pat Schloss	fix rarefaction.single	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	bug in dist.shared and tree.shared with new subsampling...	commit \| commitdiff \| tree \| snapshot
2012-05-01	Kathryn Iverson	fixed sim9 and trial_swap	commit \| commitdiff \| tree \| snapshot
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