git.donarmstrong.com Git - mothur.git/shortlog

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2011-03-07	pschloss	removed some couts from qualityscores.cpp	commit \| commitdiff \| tree \| snapshot
2011-03-07	pschloss	fix trim.seqs / qualscores bug	commit \| commitdiff \| tree \| snapshot
2011-03-07	westcott	trim.seqs fix	commit \| commitdiff \| tree \| snapshot
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfi...	commit \| commitdiff \| tree \| snapshot
2011-03-04	westcott	worked on trim.seqs - added in the groupfiles for allfi...	commit \| commitdiff \| tree \| snapshot
2011-03-04	westcott	bug fixes	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	fixed bug in seqerrorcommand	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	took out couts	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	modified reportfile class	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	modified seqerror and qualscores	commit \| commitdiff \| tree \| snapshot
2011-03-03	pschloss	modified seqerror and qualscores	commit \| commitdiff \| tree \| snapshot
2011-02-28	westcott	fixed unweighted command	commit \| commitdiff \| tree \| snapshot
2011-02-26	pschloss	some minor changes	commit \| commitdiff \| tree \| snapshot
2011-02-25	westcott	changed version and release date	commit \| commitdiff \| tree \| snapshot
2011-02-25	westcott	added root parameter to the unifrac commands so you...	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with nexus translation...	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	commit \| commitdiff \| tree \| snapshot
2011-02-23	westcott	fixed bug in unifrac commands with unrooted trees	commit \| commitdiff \| tree \| snapshot
2011-02-21	pschloss	reworked amova / homova / anosim	commit \| commitdiff \| tree \| snapshot
2011-02-18	westcott	fixed unifrac bug with multiple processors if numComps...	commit \| commitdiff \| tree \| snapshot
2011-02-18	pschloss	mods to amova command	commit \| commitdiff \| tree \| snapshot
2011-02-16	pschloss	bug fix to seq.error	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	finished anosim command	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	fixed an mpi bug in shhh.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	working on anosim command	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	took cout's from shhh.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	fixed bugg in shhh.seqs command	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	finished the chimera.slayer split function	commit \| commitdiff \| tree \| snapshot
2011-02-15	westcott	fixed mpi version compile issue with chimera.slayer	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	mods to shhh.seqs command	commit \| commitdiff \| tree \| snapshot
2011-02-15	pschloss	mods to seq.errror	commit \| commitdiff \| tree \| snapshot
2011-02-14	westcott	added make.fastq command	commit \| commitdiff \| tree \| snapshot
2011-02-14	westcott	fixed catchall PATH variable bug added trimera to chime...	commit \| commitdiff \| tree \| snapshot
2011-02-14	pschloss	* empty log message *	commit \| commitdiff \| tree \| snapshot
2011-02-11	pschloss	mod to seq.error to allow for degenerate bases in the...	commit \| commitdiff \| tree \| snapshot
2011-02-11	pschloss	shhh.seqs and trim.flows modifications.	commit \| commitdiff \| tree \| snapshot
2011-02-10	pschloss	modified reverse.seqs and qualscores.cpp	commit \| commitdiff \| tree \| snapshot
2011-02-09	pschloss	mods to trim.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-09	pschloss	mods to trim.seqs	commit \| commitdiff \| tree \| snapshot
2011-02-09	westcott	added mantel command	commit \| commitdiff \| tree \| snapshot
2011-02-09	westcott	added mantel command	commit \| commitdiff \| tree \| snapshot
2011-02-09	pschloss	mods to shhhercommand and seqerrorcommand	commit \| commitdiff \| tree \| snapshot
2011-02-08	pschloss	changes to trim.flows command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added [ERROR] flag if command aborts	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	fixed homova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added homova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added homova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree \| snapshot
2011-02-08	westcott	added amova command	commit \| commitdiff \| tree \| snapshot
2011-02-07	westcott	adding license	commit \| commitdiff \| tree \| snapshot
2011-02-04	westcott	fixed kendall method in corr.axes	commit \| commitdiff \| tree \| snapshot
2011-02-04	westcott	working on kendall	commit \| commitdiff \| tree \| snapshot
2011-02-04	pschloss	removed trimera checking from refchimeratest	commit \| commitdiff \| tree \| snapshot
2011-02-04	westcott	fixed catchall hangup if it can't find the exe	commit \| commitdiff \| tree \| snapshot
2011-02-03	westcott	corr.axes spearman	commit \| commitdiff \| tree \| snapshot
2011-02-03	westcott	changes for 1.16.0	commit \| commitdiff \| tree \| snapshot
2011-02-03	pschloss	true chimera testing using reference sequences	commit \| commitdiff \| tree \| snapshot
2011-02-03	pschloss	* empty log message *	commit \| commitdiff \| tree \| snapshot
2011-01-26	westcott	fixed mempearson and structpearson	commit \| commitdiff \| tree \| snapshot
2011-01-26	westcott	mods in testing 1.16.0	commit \| commitdiff \| tree \| snapshot
2011-01-25	westcott	mods for 1.16	commit \| commitdiff \| tree \| snapshot
2011-01-24	westcott	added merge.groups command	commit \| commitdiff \| tree \| snapshot
2011-01-24	westcott	added zscore method to normalize.shared	commit \| commitdiff \| tree \| snapshot
2011-01-24	westcott	remove.rare command	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	modified shhhercommand to make buildable with windows	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	added calcs to tree.shared. working on remove.rare...	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	added diffs and percent parameters to cluster.fragments...	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	nmds command done	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	working on nmds	commit \| commitdiff \| tree \| snapshot
2011-01-21	westcott	working on nmds	commit \| commitdiff \| tree \| snapshot
2011-01-19	westcott	working on nmds command	commit \| commitdiff \| tree \| snapshot
2011-01-19	westcott	working on nmds command	commit \| commitdiff \| tree \| snapshot
2011-01-14	westcott	fixed trim.seqs bug with qtrim parameter and added...	commit \| commitdiff \| tree \| snapshot
2011-01-10	westcott	pca command	commit \| commitdiff \| tree \| snapshot
2011-01-10	westcott	pca command	commit \| commitdiff \| tree \| snapshot
2011-01-07	westcott	finished chimera.slayer adding trim parameter, added...	commit \| commitdiff \| tree \| snapshot
2011-01-07	westcott	working on chimera change to add trim feature, fixed...	commit \| commitdiff \| tree \| snapshot
2011-01-05	westcott	added pearson coefficient metric to pcoa	commit \| commitdiff \| tree \| snapshot
2011-01-05	westcott	changed filename of pcacommand to pcoacommand	commit \| commitdiff \| tree \| snapshot
2011-01-05	westcott	removed various build warnings	commit \| commitdiff \| tree \| snapshot
2011-01-05	westcott	added metadata file as input to corr.axes	commit \| commitdiff \| tree \| snapshot
2011-01-04	westcott	Changed back to xcode build.	commit \| commitdiff \| tree \| snapshot
2011-01-04	westcott	Changed back to xcode build.	commit \| commitdiff \| tree \| snapshot
2011-01-04	westcott	Changed back to xcode build.	commit \| commitdiff \| tree \| snapshot
2011-01-04	westcott	removed parse.sff command and made its functionality...	commit \| commitdiff \| tree \| snapshot
2011-01-04	pschloss	modifications to shhh.seqs	commit \| commitdiff \| tree \| snapshot
2011-01-03	westcott	added template=self capability to chimers.slayer, worke...	commit \| commitdiff \| tree \| snapshot
2010-12-31	pschloss	added shhh.seqs command	commit \| commitdiff \| tree \| snapshot
2010-12-31	pschloss	added shhh.seqs command	commit \| commitdiff \| tree \| snapshot
2010-12-23	pschloss	addition of trim.flows	commit \| commitdiff \| tree \| snapshot
2010-12-23	westcott	fixed memory leak in maligner minCoverageFilter functio...	commit \| commitdiff \| tree \| snapshot
2010-12-23	westcott	fixed memory leak in decalc findClosest function used...	commit \| commitdiff \| tree \| snapshot
2010-12-22	westcott	chimera.slayer fix	commit \| commitdiff \| tree \| snapshot
2010-12-22	westcott	fixed trim.seqs weird characters thing	commit \| commitdiff \| tree \| snapshot
2010-12-22	westcott	added output filenames and m->control_pressed stuff...	commit \| commitdiff \| tree \| snapshot
2010-12-21	pschloss	more changes to error.seqs command and quality scores...	commit \| commitdiff \| tree \| snapshot
2010-12-20	pschloss	pat's changes to seq.error command	commit \| commitdiff \| tree \| snapshot
2010-12-17	westcott	added design parameter to the indicator command	commit \| commitdiff \| tree \| snapshot
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