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mothur.git
2012-04-27
Sarah Westcott
Merge remote-tracking branch 'mothur/master'
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2012-04-27
Sarah Westcott
changes while testing.
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2012-04-27
Kathryn Iverson
commented out the update_row_col_totals command. Should...
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2012-04-23
Sarah Westcott
bugs found while testing
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2012-04-23
Sarah Westcott
added check for positive values in pairwise.seqs gap...
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2012-04-20
Sarah Westcott
added uchime_src folder. added biom parameter to make...
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2012-04-17
Sarah Westcott
added make.biom command
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2012-04-16
Sarah Westcott
added subsample and consensus parameters to unifrac...
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2012-04-13
Sarah Westcott
fixing out labels to match those in shared file. If...
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2012-04-13
Sarah Westcott
added tree reader class to handle reading trees. Rewor...
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2012-04-11
Sarah Westcott
fixed bug with windows version of trim.seqs when run...
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2012-04-11
Sarah Westcott
added subsample and consensus parameters to unifrac...
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2012-04-05
Sarah Westcott
adding uchime source
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2012-04-05
Sarah Westcott
deleted consensus command
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2012-04-05
Sarah Westcott
added subsample, tiers and processors to tree.shared...
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2012-04-03
Sarah Westcott
fixed bug in corr.axes so that it now uses the shared...
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2012-04-03
Sarah Westcott
working on adding subsampling to dist.shared. fixed...
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2012-04-02
Sarah Westcott
added create.database command. fixed help in get.shared...
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2012-03-28
Sarah Westcott
mods to pcr.seqs
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2012-03-28
Sarah Westcott
added keep dots to pcr.seqs. fixed pre.cluster name...
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2012-03-28
Sarah Westcott
minor changes to pcr.seqs. Added filterToPos and filte...
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2012-03-27
Sarah Westcott
initialized numLinkers and numSpacers in trim.seqs...
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2012-03-27
Sarah Westcott
added pcr.seqs command. fixed bug in rarefacftion.singl...
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2012-03-13
Sarah Westcott
fixed makefile
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2012-03-13
Sarah Westcott
bug fix in linear algebra that caused an infinite loop
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2012-03-13
Sarah Westcott
added unix to ifdefs. minor changes while testing 1...
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2012-03-07
Sarah Westcott
fixed pvalues for otu.association and corr.axes, fixed...
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2012-03-06
Sarah Westcott
changed sffinfo flow default to true. fixed bug in...
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2012-03-05
Sarah Westcott
fixed classify.seq error message when flip accnos file...
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2012-03-02
Sarah Westcott
added cooccurence command
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2012-02-29
Sarah Westcott
paralellized metastats for windows
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2012-02-28
Sarah Westcott
paralellized dist.shared for windows
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2012-02-28
Sarah Westcott
fixed bug in windows summary.seqs and summary.qual...
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2012-02-24
Sarah Westcott
paralellized screen.seqs for windows.
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2012-02-24
Sarah Westcott
added linker and spacer to trim.flows
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2012-02-24
Sarah Westcott
paralellized trim.seqs for windows. fixed bug in trim...
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2012-02-22
Sarah Westcott
trim.seqs linker and spacer mods
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2012-02-21
Sarah Westcott
paralellized pairwise.seqs for windows
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2012-02-21
Sarah Westcott
paralellized filter.seqs for windows
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2012-02-20
Sarah Westcott
removed unused copy constructors and comments within...
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2012-02-06
Sarah Westcott
added flow file to sort.seqs. added setName and setScor...
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2012-02-06
Sarah Westcott
Merge remote-tracking branch 'mothur/master'
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2012-02-06
Sarah Westcott
added sort.seqs command. puts sequences from a fasta...
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2012-02-03
Pat Schloss
upped the optimization code for debugging from -O0...
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2012-02-03
Sarah Westcott
testing public / private push error
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2012-02-03
Sarah Westcott
Merge remote-tracking branch 'mothur/master'
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2012-02-03
Sarah Westcott
testing public repo change
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2012-02-03
John Westcott
Merge remote-tracking branch 'origin/master'
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2012-02-03
John Westcott
test of commit push pull
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2012-02-03
Sarah Westcott
test on main machine
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2012-02-03
Sarah Westcott
Merge remote-tracking branch 'mothur/master'
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2012-02-03
Sarah Westcott
Removing .DS_Store
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2012-02-01
Sarah Westcott
trying to push, still figuring out the new Xcode
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2012-02-01
Sarah Westcott
Merge remote-tracking branch 'mothur/master'
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2012-02-01
Sarah Westcott
added significance scores to core.axes. added design...
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2012-01-30
Pat Schloss
pat testing git hub commit
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2012-01-30
John Westcott
test on laptop setup
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2012-01-30
Sarah Westcott
test ignore
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2012-01-30
Sarah Westcott
test
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2012-01-30
Sarah Westcott
test
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2012-01-30
Sarah Westcott
test
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2012-01-30
Sarah Westcott
added test comment
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2012-01-27
westcott
added sequence name to error string in fastq.info....
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2012-01-25
westcott
added otu.association command. added calcSpearman,...
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2012-01-19
westcott
fixed bug with shhh.flow from file path name in write...
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2012-01-09
westcott
1.23.0
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2012-01-09
westcott
1.23.0
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2012-01-04
westcott
1.23.0
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2011-12-23
westcott
changed rarefaction.single output
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2011-12-23
pschloss
*** empty log message ***
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2011-12-23
westcott
added qvalues to metastats. fixed bug with chimera...
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2011-12-06
westcott
metastats in progress
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2011-12-06
westcott
metastats in progress
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2011-11-30
westcott
fixed label option in sens.spec and added smart distancing.
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2011-11-29
westcott
Added summary.qual command. Added fontsize parameter...
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2011-11-28
westcott
added fontsize to heatmap.sim, paralellized chimera...
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2011-11-14
westcott
finished shhh.seqs command, fixed bug with remove.group...
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2011-11-11
westcott
fixed bug with trim.flows that was adding flow files...
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2011-11-07
westcott
working on chimera.perseus. made removeConfidences...
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2011-10-26
westcott
paralellized chimera.uchime for windows for both by...
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2011-10-24
westcott
added processors to pre.cluster for mac and windows...
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2011-10-18
westcott
1.22.0
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2011-10-18
westcott
1.22.0
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2011-10-18
westcott
1.22.0
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2011-10-11
pschloss
camberra fix
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2011-10-07
westcott
testing 1.22.0
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2011-10-04
westcott
fixed minor issue with sub.sample command.
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2011-10-02
westcott
check in for trip
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2011-09-23
westcott
added summary.tax command and fixed bug with root level...
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2011-09-21
westcott
finished added bygroup processing of chimeras in chimer...
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2011-09-16
westcott
modified split.groups to use sequenceParser
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2011-09-14
westcott
adds group parameter to chimera.uchime so you can check...
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2011-09-13
westcott
working on windows paralellization, added trimOligos...
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2011-08-22
westcott
added multiple processors option for Windows users...
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2011-08-09
westcott
added count.groups command and paralellized align.seqs...
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2011-08-09
westcott
added count.groups command and paralellized align.seqs...
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2011-08-03
westcott
added paralellization for windows to dist.seqs and...
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2011-07-29
westcott
removed UWSig and WSig from output if user does not...
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2011-07-27
westcott
1.21.0
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2011-07-20
westcott
1.21.0
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