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rsem.git
2012-02-09
Bo Li
The order of @SQ tags in SAM/BAM files can be arbitrary now
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2012-02-08
Bo Li
add --no-bam-output option to not generate output bam...
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2012-02-08
Bo Li
roll back to original version plus fixed a small bug...
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2012-02-08
Bo Li
rewrote parallelization of calcCI.cpp
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2012-01-31
Bo Li
rsem v1.1.16
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2012-01-26
Bo Li
rsem v1.1.15
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2012-01-18
Bo Li
rsem v1.1.14
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2011-12-31
Bo Li
relax the requirement about GTF attribute format
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2011-12-14
Bo Li
modify one error message and add --bowtie-chunkmbs...
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2011-12-14
Bo Li
Merge remote-tracking branch 'origin/master'
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2011-12-14
Bo Li
another change
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2011-12-14
bli25wisc
Merge pull request #1 from earonesty/master
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2011-12-14
Erik Aronesty
--bowtie-chunkmbs
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2011-12-10
Bo Li
updated some description
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2011-12-10
Bo Li
new update
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2011-12-09
Bo Li
convert-sam-for-rsem is updated
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2011-12-09
Bo Li
add a script to convert sam file for non-bowtie aligner
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2011-12-04
Bo Li
rsem-v1.1.14b3
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2011-12-02
Bo Li
rsem-1.1.14 with transcript wiggle plot generation
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2011-12-01
Bo Li
add new files
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2011-11-28
Bo Li
tested version for tbam2gbam
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2011-11-16
Colin Dewey
Refactored wiggle code and added rsem-bam2readdepth...
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2011-11-11
Bo Li
some displaying issue in rsem-calculate-expression...
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2011-11-11
Bo Li
add optional field XS for cufflinks
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2011-11-10
Bo Li
rsem v1.1.14, add --sampling-for-bam option, modify...
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2011-11-06
Bo Li
rsem v1.1.13, speed up EM by only updating model parame...
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2011-10-19
Bo Li
rsem v1.1.12 extract-transcript-to-gene-map-from-trinit...
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2011-10-19
Bo Li
rsem v1.1.12, add a script to extract transcript-to...
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2011-08-25
Bo Li
rsem v1.1.11, allow spaces appear in field seqname...
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2011-08-25
Bo Li
rsem v1.1.11
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2011-08-12
Bo Li
fix one bug will lead using not the last theta value...
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2011-08-11
Bo Li
rsem v1.2.0
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2011-07-26
Bo Li
MAPQ changed
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2011-05-27
Bo Li
rsem v1.1.9
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2011-05-24
Bo Li
rsem-plot-model updated
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2011-05-12
Colin Dewey
Style edits to rsem-plot-model
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2011-05-12
Colin Dewey
Added check in rsem-plot-model for .stat output directory
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2011-04-26
Bo Li
fixed a bug in rsem-plot-model
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2011-04-25
Bo Li
add feature that jump lines with # in gtf
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2011-04-25
Bo Li
back to single threaded Gibbs
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2011-04-25
Bo Li
back to single thread Gibbs
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2011-04-25
Bo Li
Version with Gibbs parallelized
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2011-04-21
Bo Li
a bug in simulation.cpp is fixed.
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2011-04-21
Bo Li
a bug in *?Model.h was fixed.
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2011-04-19
Bo Li
some changes
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2011-04-18
Bo Li
RSEM v1.1.8
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2011-04-18
Bo Li
RSEM v1.1.8
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2011-04-17
Bo Li
lots of changes
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2011-04-09
Bo Li
fixed a bug for transcript set as reference
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2011-04-02
Bo Li
fix a bug in partition reads for parallel
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2011-03-22
Bo Li
README.md is updated to include C++, Perl and R as...
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2011-03-18
Bo Li
a bug in rsem-plot-model is fixed
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2011-03-18
Bo Li
v1.1.5.b
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2011-03-17
Bo Li
Fixed bugs in the Gibbs sampler. Fixed a bug which...
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2011-03-15
Bo Li
rsem-plot-model was changed again
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2011-03-15
Bo Li
rsem-plot-model was modified
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2011-03-11
Bo Li
rename plotModel.R to rsem-plot-model
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2011-03-11
Bo Li
README.md changed
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2011-03-11
Bo Li
Enable RSEM to visualize the model learned from data
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2011-03-09
Bo Li
Fixed a bug related to output format. Grant read permes...
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2011-02-21
Bo Li
README.md modified
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2011-02-21
Bo Li
README.md
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2011-02-21
Bo Li
README.md modified to display correctly in github
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2011-02-21
Bo Li
README.md changed
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2011-02-17
Bo Li
change README.txt to README.md
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2011-02-17
Bo Li
change README.txt to README.md
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2011-02-17
Bo Li
v1.1.2
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2011-02-17
Bo Li
Normalized Read Fraction(nrf) are eliminated from outpu...
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2011-02-17
Bo Li
Normalized Read Fraction(nrf) are eliminated from outpu...
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2011-02-11
Bo Li
Bugs in SingleModel.h are fixed.
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2011-02-09
Bo Li
RSEM Source Codes
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