git.donarmstrong.com Git - mothur.git/shortlog

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2013-09-11	kdiverson	adding code for confusion matrix	commit \| commitdiff \| tree \| snapshot
2013-09-11	kdiverson	adding code for confusion matrix	commit \| commitdiff \| tree \| snapshot
2013-09-10	kdiverson	changed random forest output filename	commit \| commitdiff \| tree \| snapshot
2013-09-04	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-09-04	Pat Schloss	random stuff	commit \| commitdiff \| tree \| snapshot
2013-08-14	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-08-14	Sarah Westcott	changed name of get.metacommunity to get.communitytype...	commit \| commitdiff \| tree \| snapshot
2013-08-02	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-08-02	Sarah Westcott	Qualscore gobbles	commit \| commitdiff \| tree \| snapshot
2013-07-19	Pat Schloss	Update mgcluster to use dist=1 for missing distances...	commit \| commitdiff \| tree \| snapshot
2013-07-18	Sarah Westcott	added adjust parameter to mgcluster. fixed bug in class...	commit \| commitdiff \| tree \| snapshot
2013-07-17	Pat Schloss	asdf	commit \| commitdiff \| tree \| snapshot
2013-07-17	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-07-17	Pat Schloss	fixed problem where order=B was not checking for the...	commit \| commitdiff \| tree \| snapshot
2013-06-24	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-06-24	Sarah Westcott	added kruskal.wallis command. added worked on make...	commit \| commitdiff \| tree \| snapshot
2013-06-24	John Westcott	test change	commit \| commitdiff \| tree \| snapshot
2013-06-13	Sarah Westcott	mgcluster with count file needed to create a nameMap...	commit \| commitdiff \| tree \| snapshot
2013-06-13	Sarah Westcott	added make.lefse command. fixed bug in make.contigs...	commit \| commitdiff \| tree \| snapshot
2013-05-29	Sarah Westcott	get.seqs not renaming sequences correctly for dups...	commit \| commitdiff \| tree \| snapshot
2013-05-29	Sarah Westcott	added rename.seqs command.	commit \| commitdiff \| tree \| snapshot
2013-05-28	Sarah Westcott	case sensitive include statement caused issues for...	commit \| commitdiff \| tree \| snapshot
2013-05-28	Sarah Westcott	citation changes for 1.31.0	commit \| commitdiff \| tree \| snapshot
2013-05-24	Sarah Westcott	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-05-24	Sarah Westcott	added debugging to otu.association	commit \| commitdiff \| tree \| snapshot
2013-05-23	Abu Zaher Md...	re-enabling the destructor to enable deletion of dynami...	commit \| commitdiff \| tree \| snapshot
2013-05-23	Abu Zaher Md...	Merge branch 'master' into dev-ml	commit \| commitdiff \| tree \| snapshot
2013-05-23	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2013-05-17	Sarah Westcott	changed how rarefaction commands find the lci and hci...	commit \| commitdiff \| tree \| snapshot
2013-05-17	Sarah Westcott	added modify names parameter to set.dir	commit \| commitdiff \| tree \| snapshot
2013-05-16	Kathryn Iverson	updated default parameters. These are giving better...	commit \| commitdiff \| tree \| snapshot
2013-05-16	Kathryn Iverson	cleaned up what is printed to screen	commit \| commitdiff \| tree \| snapshot
2013-05-15	Sarah Westcott	added make.lookup command.	commit \| commitdiff \| tree \| snapshot
2013-05-14	Sarah Westcott	added count file to create.database command. corrected...	commit \| commitdiff \| tree \| snapshot
2013-05-13	Sarah Westcott	cluster.split was not sorting the list file in order...	commit \| commitdiff \| tree \| snapshot
2013-05-13	Sarah Westcott	added sparcc command. fixed bug in remove.groups that...	commit \| commitdiff \| tree \| snapshot
2013-05-06	Sarah Westcott	paralellized parsimony, unifrac.unweighted, phylo.diver...	commit \| commitdiff \| tree \| snapshot
2013-05-02	Abu Zaher Md...	a lot of new input parameters in rf module, implemented...	commit \| commitdiff \| tree \| snapshot
2013-04-29	SarahsWork	added square format for phylipfile. made command work...	commit \| commitdiff \| tree \| snapshot
2013-04-29	SarahsWork	added shared, constaxonomy and label parameter to get...	commit \| commitdiff \| tree \| snapshot
2013-04-26	SarahsWork	added adjustDots function to pcr.seqs, keeps sequences...	commit \| commitdiff \| tree \| snapshot
2013-04-22	SarahsWork	paralellized make.table / count.seqs command. added...	commit \| commitdiff \| tree \| snapshot
2013-04-22	SarahsWork	added flag to count table read so that commands that...	commit \| commitdiff \| tree \| snapshot
2013-04-19	SarahsWork	added mothurOutJustToScreen function and changed all...	commit \| commitdiff \| tree \| snapshot
2013-04-19	SarahsWork	paralellized unifrac.weighted for windows. added get...	commit \| commitdiff \| tree \| snapshot
2013-04-12	SarahsWork	added get.metacommunity command.	commit \| commitdiff \| tree \| snapshot
2013-04-08	SarahsWork	added rarepercent and keepties parameters to the filter...	commit \| commitdiff \| tree \| snapshot
2013-04-05	SarahsWork	added method parameter to get.oturep. options method...	commit \| commitdiff \| tree \| snapshot
2013-04-05	SarahsWork	sffinfo bug with flow grams right index when clipQualRi...	commit \| commitdiff \| tree \| snapshot
2013-04-03	SarahsWork	added name, group and count files to chop.seqs. added...	commit \| commitdiff \| tree \| snapshot
2013-04-03	SarahsWork	added count file to get.sabund and get.rabund commands...	commit \| commitdiff \| tree \| snapshot
2013-04-01	SarahsWork	added end of file character to some type type reads...	commit \| commitdiff \| tree \| snapshot
2013-03-25	SarahsWork	removed make count from make.contigs	commit \| commitdiff \| tree \| snapshot
2013-03-22	SarahsWork	make.contigs bug with file option and multiple processo...	commit \| commitdiff \| tree \| snapshot
2013-03-19	SarahsWork	finished dereplicate changes to chimera commands. ...	commit \| commitdiff \| tree \| snapshot
2013-03-18	SarahsWork	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-03-18	SarahsWork	working on dereplicate=t issue in chimera.slayer and...	commit \| commitdiff \| tree \| snapshot
2013-03-13	Pat Schloss	Fixed a bug in the count output of seq.error when using...	commit \| commitdiff \| tree \| snapshot
2013-03-12	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-03-12	Pat Schloss	fine tuning to make.contigs parameters	commit \| commitdiff \| tree \| snapshot
2013-03-08	SarahsWork	finished up adding N code to trim.flows	commit \| commitdiff \| tree \| snapshot
2013-03-08	SarahsWork	added N for trimOligos change	commit \| commitdiff \| tree \| snapshot
2013-03-08	SarahsWork	added N code to flow data. removed changed for trimming...	commit \| commitdiff \| tree \| snapshot
2013-03-06	SarahsWork	added pacbio parameter to fastq.info. fixed issue with...	commit \| commitdiff \| tree \| snapshot
2013-03-06	SarahsWork	<= change for anova and homova. finished chimera.uchime...	commit \| commitdiff \| tree \| snapshot
2013-03-05	SarahsWork	Merge remote-tracking branch 'origin'	commit \| commitdiff \| tree \| snapshot
2013-03-05	SarahsWork	working on chimera.uchime change for dereplicate=t...	commit \| commitdiff \| tree \| snapshot
2013-03-02	Pat Schloss	Added flow=I to trim.flows	commit \| commitdiff \| tree \| snapshot
2013-03-02	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-03-02	Pat Schloss	pat's mods to seqerrorcommand	commit \| commitdiff \| tree \| snapshot
2013-02-27	SarahsWork	mods to resolve some misc warnings. added alignPrimer...	commit \| commitdiff \| tree \| snapshot
2013-02-20	Pat Schloss	updated project file	commit \| commitdiff \| tree \| snapshot
2013-02-19	SarahsWork	working on topdown in pre.cluster	commit \| commitdiff \| tree \| snapshot
2013-02-18	SarahsWork	linux screen.seqs segfault	commit \| commitdiff \| tree \| snapshot
2013-02-18	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-02-18	Pat Schloss	update to new version of Xcode	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	test	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	Removed file that shouldn't be tracked	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	test	commit \| commitdiff \| tree \| snapshot
2013-02-15	SarahsWork	test commit	commit \| commitdiff \| tree \| snapshot
2013-02-13	Sarah Westcott	added trim overlap parameter to make.contigs	commit \| commitdiff \| tree \| snapshot
2013-02-13	Sarah Westcott	added merge.taxsummary command. added column format...	commit \| commitdiff \| tree \| snapshot
2013-02-12	Sarah Westcott	added order=A or order=B to trim.flows and shhh.flows...	commit \| commitdiff \| tree \| snapshot
2013-02-11	Sarah Westcott	added ':' name check to seq. error and fastq.info....	commit \| commitdiff \| tree \| snapshot
2013-02-07	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-02-07	Pat Schloss	some minor typo	commit \| commitdiff \| tree \| snapshot
2013-02-06	Sarah Westcott	added *.count.summary file to count.groups command...	commit \| commitdiff \| tree \| snapshot
2013-01-29	Sarah Westcott	added get.dists and remove.dists commands. fixed bug...	commit \| commitdiff \| tree \| snapshot
2013-01-28	Sarah Westcott	added checks to make sure windows processes completed...	commit \| commitdiff \| tree \| snapshot
2013-01-25	Sarah Westcott	added primer.design command. fixed bug with linux...	commit \| commitdiff \| tree \| snapshot
2013-01-18	Sarah Westcott	fixed seq. error align=f issue. added std and ave calcs...	commit \| commitdiff \| tree \| snapshot
2013-01-16	Sarah Westcott	added topdown parameter to pre.cluster. added more...	commit \| commitdiff \| tree \| snapshot
2013-01-11	Sarah Westcott	fixed bug in pre.cluster with output file name change...	commit \| commitdiff \| tree \| snapshot
2013-01-08	Sarah Westcott	added dereplicate parameter to chimera.slayer and chime...	commit \| commitdiff \| tree \| snapshot
2013-01-04	Sarah Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2013-01-04	Sarah Westcott	added filter.shared command. fixed lci and uci for...	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	fix bug in unaligned seq.error / chimeraref	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	TEST	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2013-01-03	Pat Schloss	test	commit \| commitdiff \| tree \| snapshot
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