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mothur.git
2013-09-11 kdiversonadding code for confusion matrix commit | commitdiff | tree | snapshot
2013-09-11 kdiversonadding code for confusion matrix commit | commitdiff | tree | snapshot
2013-09-10 kdiversonchanged random forest output filename commit | commitdiff | tree | snapshot
2013-09-04 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2013-09-04 Pat Schlossrandom stuff commit | commitdiff | tree | snapshot
2013-08-14 Sarah WestcottMerge remote-tracking branch 'origin' commit | commitdiff | tree | snapshot
2013-08-14 Sarah Westcottchanged name of get.metacommunity to get.communitytype... commit | commitdiff | tree | snapshot
2013-08-02 Sarah WestcottMerge remote-tracking branch 'origin' commit | commitdiff | tree | snapshot
2013-08-02 Sarah WestcottQualscore gobbles commit | commitdiff | tree | snapshot
2013-07-19 Pat SchlossUpdate mgcluster to use dist=1 for missing distances... commit | commitdiff | tree | snapshot
2013-07-18 Sarah Westcottadded adjust parameter to mgcluster. fixed bug in class... commit | commitdiff | tree | snapshot
2013-07-17 Pat Schlossasdf commit | commitdiff | tree | snapshot
2013-07-17 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2013-07-17 Pat Schlossfixed problem where order=B was not checking for the... commit | commitdiff | tree | snapshot
2013-06-24 Sarah WestcottMerge remote-tracking branch 'origin' commit | commitdiff | tree | snapshot
2013-06-24 Sarah Westcottadded kruskal.wallis command. added worked on make... commit | commitdiff | tree | snapshot
2013-06-24 John Westcotttest change commit | commitdiff | tree | snapshot
2013-06-13 Sarah Westcottmgcluster with count file needed to create a nameMap... commit | commitdiff | tree | snapshot
2013-06-13 Sarah Westcottadded make.lefse command. fixed bug in make.contigs... commit | commitdiff | tree | snapshot
2013-05-29 Sarah Westcottget.seqs not renaming sequences correctly for dups... commit | commitdiff | tree | snapshot
2013-05-29 Sarah Westcottadded rename.seqs command. commit | commitdiff | tree | snapshot
2013-05-28 Sarah Westcottcase sensitive include statement caused issues for... commit | commitdiff | tree | snapshot
2013-05-28 Sarah Westcottcitation changes for 1.31.0 commit | commitdiff | tree | snapshot
2013-05-24 Sarah WestcottMerge remote-tracking branch 'origin' commit | commitdiff | tree | snapshot
2013-05-24 Sarah Westcottadded debugging to otu.association commit | commitdiff | tree | snapshot
2013-05-23 Abu Zaher Md... re-enabling the destructor to enable deletion of dynami... commit | commitdiff | tree | snapshot
2013-05-23 Abu Zaher Md... Merge branch 'master' into dev-ml commit | commitdiff | tree | snapshot
2013-05-23 Sarah Westcottchanges while testing commit | commitdiff | tree | snapshot
2013-05-17 Sarah Westcottchanged how rarefaction commands find the lci and hci... commit | commitdiff | tree | snapshot
2013-05-17 Sarah Westcottadded modify names parameter to set.dir commit | commitdiff | tree | snapshot
2013-05-16 Kathryn Iversonupdated default parameters. These are giving better... commit | commitdiff | tree | snapshot
2013-05-16 Kathryn Iversoncleaned up what is printed to screen commit | commitdiff | tree | snapshot
2013-05-15 Sarah Westcottadded make.lookup command. commit | commitdiff | tree | snapshot
2013-05-14 Sarah Westcottadded count file to create.database command. corrected... commit | commitdiff | tree | snapshot
2013-05-13 Sarah Westcottcluster.split was not sorting the list file in order... commit | commitdiff | tree | snapshot
2013-05-13 Sarah Westcottadded sparcc command. fixed bug in remove.groups that... commit | commitdiff | tree | snapshot
2013-05-06 Sarah Westcottparalellized parsimony, unifrac.unweighted, phylo.diver... commit | commitdiff | tree | snapshot
2013-05-02 Abu Zaher Md... a lot of new input parameters in rf module, implemented... commit | commitdiff | tree | snapshot
2013-04-29 SarahsWorkadded square format for phylipfile. made command work... commit | commitdiff | tree | snapshot
2013-04-29 SarahsWorkadded shared, constaxonomy and label parameter to get... commit | commitdiff | tree | snapshot
2013-04-26 SarahsWorkadded adjustDots function to pcr.seqs, keeps sequences... commit | commitdiff | tree | snapshot
2013-04-22 SarahsWorkparalellized make.table / count.seqs command. added... commit | commitdiff | tree | snapshot
2013-04-22 SarahsWorkadded flag to count table read so that commands that... commit | commitdiff | tree | snapshot
2013-04-19 SarahsWorkadded mothurOutJustToScreen function and changed all... commit | commitdiff | tree | snapshot
2013-04-19 SarahsWorkparalellized unifrac.weighted for windows. added get... commit | commitdiff | tree | snapshot
2013-04-12 SarahsWorkadded get.metacommunity command. commit | commitdiff | tree | snapshot
2013-04-08 SarahsWorkadded rarepercent and keepties parameters to the filter... commit | commitdiff | tree | snapshot
2013-04-05 SarahsWorkadded method parameter to get.oturep. options method... commit | commitdiff | tree | snapshot
2013-04-05 SarahsWorksffinfo bug with flow grams right index when clipQualRi... commit | commitdiff | tree | snapshot
2013-04-03 SarahsWorkadded name, group and count files to chop.seqs. added... commit | commitdiff | tree | snapshot
2013-04-03 SarahsWorkadded count file to get.sabund and get.rabund commands... commit | commitdiff | tree | snapshot
2013-04-01 SarahsWorkadded end of file character to some type type reads... commit | commitdiff | tree | snapshot
2013-03-25 SarahsWorkremoved make count from make.contigs commit | commitdiff | tree | snapshot
2013-03-22 SarahsWorkmake.contigs bug with file option and multiple processo... commit | commitdiff | tree | snapshot
2013-03-19 SarahsWorkfinished dereplicate changes to chimera commands. ... commit | commitdiff | tree | snapshot
2013-03-18 SarahsWorkMerge remote-tracking branch 'origin' commit | commitdiff | tree | snapshot
2013-03-18 SarahsWorkworking on dereplicate=t issue in chimera.slayer and... commit | commitdiff | tree | snapshot
2013-03-13 Pat SchlossFixed a bug in the count output of seq.error when using... commit | commitdiff | tree | snapshot
2013-03-12 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2013-03-12 Pat Schlossfine tuning to make.contigs parameters commit | commitdiff | tree | snapshot
2013-03-08 SarahsWorkfinished up adding N code to trim.flows commit | commitdiff | tree | snapshot
2013-03-08 SarahsWorkadded N for trimOligos change commit | commitdiff | tree | snapshot
2013-03-08 SarahsWorkadded N code to flow data. removed changed for trimming... commit | commitdiff | tree | snapshot
2013-03-06 SarahsWorkadded pacbio parameter to fastq.info. fixed issue with... commit | commitdiff | tree | snapshot
2013-03-06 SarahsWork<= change for anova and homova. finished chimera.uchime... commit | commitdiff | tree | snapshot
2013-03-05 SarahsWorkMerge remote-tracking branch 'origin' commit | commitdiff | tree | snapshot
2013-03-05 SarahsWorkworking on chimera.uchime change for dereplicate=t... commit | commitdiff | tree | snapshot
2013-03-02 Pat SchlossAdded flow=I to trim.flows commit | commitdiff | tree | snapshot
2013-03-02 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2013-03-02 Pat Schlosspat's mods to seqerrorcommand commit | commitdiff | tree | snapshot
2013-02-27 SarahsWorkmods to resolve some misc warnings. added alignPrimer... commit | commitdiff | tree | snapshot
2013-02-20 Pat Schlossupdated project file commit | commitdiff | tree | snapshot
2013-02-19 SarahsWorkworking on topdown in pre.cluster commit | commitdiff | tree | snapshot
2013-02-18 SarahsWorklinux screen.seqs segfault commit | commitdiff | tree | snapshot
2013-02-18 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2013-02-18 Pat Schlossupdate to new version of Xcode commit | commitdiff | tree | snapshot
2013-02-15 SarahsWorktest commit | commitdiff | tree | snapshot
2013-02-15 SarahsWorkRemoved file that shouldn't be tracked commit | commitdiff | tree | snapshot
2013-02-15 SarahsWorktest commit | commitdiff | tree | snapshot
2013-02-15 SarahsWorktest commit commit | commitdiff | tree | snapshot
2013-02-13 Sarah Westcottadded trim overlap parameter to make.contigs commit | commitdiff | tree | snapshot
2013-02-13 Sarah Westcottadded merge.taxsummary command. added column format... commit | commitdiff | tree | snapshot
2013-02-12 Sarah Westcottadded order=A or order=B to trim.flows and shhh.flows... commit | commitdiff | tree | snapshot
2013-02-11 Sarah Westcottadded ':' name check to seq. error and fastq.info.... commit | commitdiff | tree | snapshot
2013-02-07 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2013-02-07 Pat Schlosssome minor typo commit | commitdiff | tree | snapshot
2013-02-06 Sarah Westcottadded *.count.summary file to count.groups command... commit | commitdiff | tree | snapshot
2013-01-29 Sarah Westcottadded get.dists and remove.dists commands. fixed bug... commit | commitdiff | tree | snapshot
2013-01-28 Sarah Westcottadded checks to make sure windows processes completed... commit | commitdiff | tree | snapshot
2013-01-25 Sarah Westcottadded primer.design command. fixed bug with linux... commit | commitdiff | tree | snapshot
2013-01-18 Sarah Westcottfixed seq. error align=f issue. added std and ave calcs... commit | commitdiff | tree | snapshot
2013-01-16 Sarah Westcottadded topdown parameter to pre.cluster. added more... commit | commitdiff | tree | snapshot
2013-01-11 Sarah Westcottfixed bug in pre.cluster with output file name change... commit | commitdiff | tree | snapshot
2013-01-08 Sarah Westcottadded dereplicate parameter to chimera.slayer and chime... commit | commitdiff | tree | snapshot
2013-01-04 Sarah WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2013-01-04 Sarah Westcottadded filter.shared command. fixed lci and uci for... commit | commitdiff | tree | snapshot
2013-01-03 Pat Schlossfix bug in unaligned seq.error / chimeraref commit | commitdiff | tree | snapshot
2013-01-03 Pat SchlossTEST commit | commitdiff | tree | snapshot
2013-01-03 Pat SchlossMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2013-01-03 Pat Schlosstest commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches