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mothur.git
2010-03-11 westcotttesting mpi commit | commitdiff | tree | snapshot
2010-03-04 westcottmothur with external build commit | commitdiff | tree | snapshot
2010-03-04 westcottchanges to filter.seqs commit | commitdiff | tree | snapshot
2010-03-03 westcottadded checks for ^C to quit command instead of program commit | commitdiff | tree | snapshot
2010-03-01 westcottadding mothurout.h and .cpp to repo commit | commitdiff | tree | snapshot
2010-02-26 westcottfilter.seqs can now accept multiple fasta files commit | commitdiff | tree | snapshot
2010-02-26 westcottcreated mothurOut class to handle logfiles commit | commitdiff | tree | snapshot
2010-02-25 westcottadded parse.list command commit | commitdiff | tree | snapshot
2010-02-24 westcottfinished chimera changes commit | commitdiff | tree | snapshot
2010-02-23 westcottadded warning about merging with something above cutoff... commit | commitdiff | tree | snapshot
2010-02-23 westcottadded warning about merging with something above cutoff... commit | commitdiff | tree | snapshot
2010-02-22 westcottchimeras, fix to sabundvector and sharedsabundvector... commit | commitdiff | tree | snapshot
2010-02-17 westcottchimeras commit | commitdiff | tree | snapshot
2010-02-16 westcottchimeracode commit | commitdiff | tree | snapshot
2010-02-12 westcottworking on chimeras commit | commitdiff | tree | snapshot
2010-02-04 pschlosstest commit | commitdiff | tree | snapshot
2010-02-04 pschlosspat's ../ bug fix - test commit | commitdiff | tree | snapshot
2010-02-04 pschlosspat's ../ bug fix commit | commitdiff | tree | snapshot
2010-02-03 westcottadded name option to read.tree for use in unifrac and... commit | commitdiff | tree | snapshot
2010-02-02 pschlosspat's differences before v.1.8 commit | commitdiff | tree | snapshot
2010-02-02 westcottfixed bugs for 1.8 commit | commitdiff | tree | snapshot
2010-01-28 westcottfixed some bugs found while testing 1.8 commit | commitdiff | tree | snapshot
2010-01-27 westcottfixed some bugs found while testing 1.8 commit | commitdiff | tree | snapshot
2010-01-27 westcottadded distance search method to classify.seqs commit | commitdiff | tree | snapshot
2010-01-26 westcottadded set.dir command and modified commands to redirect... commit | commitdiff | tree | snapshot
2010-01-26 pschlosspat's edits from 1/26/2010 commit | commitdiff | tree | snapshot
2010-01-19 westcottadded out.hierarchy command commit | commitdiff | tree | snapshot
2010-01-19 pschlosspat's mods to morisitahorn and pre.cluster commit | commitdiff | tree | snapshot
2010-01-19 westcottadded warning about average neighbor merges around... commit | commitdiff | tree | snapshot
2010-01-14 westcottadded formatmatrix, formatcolumn, and formatphylip... commit | commitdiff | tree | snapshot
2010-01-12 westcottworked on hcluster. made .single command run using... commit | commitdiff | tree | snapshot
2010-01-05 westcottyou can now use a distance matrix as input for the... commit | commitdiff | tree | snapshot
2010-01-04 westcottadded pca command commit | commitdiff | tree | snapshot
2009-12-23 westcottadded average and nearest neighbor methods to hcluster commit | commitdiff | tree | snapshot
2009-12-23 westcottprecluster command finished commit | commitdiff | tree | snapshot
2009-12-21 westcottfixed some bugs and added mgcluster command commit | commitdiff | tree | snapshot
2009-12-09 westcottadded sorted parameter to get.oturep, added error check... commit | commitdiff | tree | snapshot
2009-12-08 westcottadded list parameter to get.seqs and remove.seqs and... commit | commitdiff | tree | snapshot
2009-12-02 westcottmodified sequence class to read fasta files with commen... commit | commitdiff | tree | snapshot
2009-11-25 westcotta few changes to chimera classes commit | commitdiff | tree | snapshot
2009-11-25 pschlossversion for 10.5 commit | commitdiff | tree | snapshot
2009-11-24 westcottchanged get.sharedotu to get.sharedseqs commit | commitdiff | tree | snapshot
2009-11-24 pschlossfixed splash page citation commit | commitdiff | tree | snapshot
2009-11-24 westcottchanged get.sharedotu to get.sharedseqs commit | commitdiff | tree | snapshot
2009-11-24 westcottfixed bug in hcluster command commit | commitdiff | tree | snapshot
2009-11-23 westcottedited taxonomy equalizer to fix bug with windows commit | commitdiff | tree | snapshot
2009-11-23 westcottupdated phylotype command commit | commitdiff | tree | snapshot
2009-11-23 westcottchanged label outputs for phylotype command commit | commitdiff | tree | snapshot
2009-11-23 westcottadded phylotype command which reads a taxonomy file... commit | commitdiff | tree | snapshot
2009-11-19 westcottfixed bug in libshuff commit | commitdiff | tree | snapshot
2009-11-17 westcottfinal fixes for 1.7 commit | commitdiff | tree | snapshot
2009-11-13 westcottfinished work on classify.seqs bayesian method and... commit | commitdiff | tree | snapshot
2009-11-05 westcottstarted work on classify.seqs command. changed the... commit | commitdiff | tree | snapshot
2009-11-02 westcottadded groups option to read.otu, added qtrim option... commit | commitdiff | tree | snapshot
2009-10-29 westcottfixed bug with hcluster commit | commitdiff | tree | snapshot
2009-10-29 westcottadded hcluster command and fixed some bugs, namely... commit | commitdiff | tree | snapshot
2009-10-12 westcottfinished chimeraslayer method and added get.listcount... commit | commitdiff | tree | snapshot
2009-09-29 westcottworking on chimeraslayer and found bug in shared command. commit | commitdiff | tree | snapshot
2009-09-28 westcottstarted adding chimeraslayer method and fixed minor... commit | commitdiff | tree | snapshot
2009-09-23 westcottadded get.sharedotu command commit | commitdiff | tree | snapshot
2009-09-22 westcottremoved line option commit | commitdiff | tree | snapshot
2009-09-21 westcottalign.check command added commit | commitdiff | tree | snapshot
2009-09-18 westcottadding more error checking for list and group files... commit | commitdiff | tree | snapshot
2009-09-18 westcottremoving extra file output from pintail commit | commitdiff | tree | snapshot
2009-09-17 westcottadded check for blank files in openInputFile, add check... commit | commitdiff | tree | snapshot
2009-09-15 westcottfixed some issues while testing 1.6 commit | commitdiff | tree | snapshot
2009-09-14 westcottadded help to chimera.seqs commit | commitdiff | tree | snapshot
2009-09-11 westcottchimeracheck method added commit | commitdiff | tree | snapshot
2009-09-09 westcottcontinued work on chimeras and fixed bug in trim.seqs... commit | commitdiff | tree | snapshot
2009-09-08 westcottfinished with ccode, returned bellerophon to last save... commit | commitdiff | tree | snapshot
2009-09-04 westcottchanged reporting in ccode to only report those who... commit | commitdiff | tree | snapshot
2009-09-04 westcottccode working - still need to paralellize commit | commitdiff | tree | snapshot
2009-09-02 westcottupdated pats contact and mothur header info commit | commitdiff | tree | snapshot
2009-09-01 westcottchanged raredisplay to use vectors instead of files commit | commitdiff | tree | snapshot
2009-09-01 westcottadded more descriptive error messages to sharedlist commit | commitdiff | tree | snapshot
2009-08-31 westcottchecking in chimera files in progress after move to... commit | commitdiff | tree | snapshot
2009-08-13 westcottlast changes before move commit | commitdiff | tree | snapshot
2009-08-13 westcottlast changes before move commit | commitdiff | tree | snapshot
2009-08-12 westcottremoving mallard commit | commitdiff | tree | snapshot
2009-08-11 westcottchimera.seqs pintail is working. commit | commitdiff | tree | snapshot
2009-08-10 pschlossmothur-v.1.5.0 commit | commitdiff | tree | snapshot
2009-08-06 westcottThis is 1.5. commit | commitdiff | tree | snapshot
2009-08-06 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-05 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-05 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-03 westcottbugs for 1.5 commit | commitdiff | tree | snapshot
2009-08-03 westcottbugs for 1.5 commit | commitdiff | tree | snapshot
2009-08-02 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-08-01 westcottbugs fixes while testing for 1.5 release commit | commitdiff | tree | snapshot
2009-07-30 westcottworking on chimeras commit | commitdiff | tree | snapshot
2009-07-30 pschlosspat's changes after generating wiki pages for 1.5 commit | commitdiff | tree | snapshot
2009-07-30 westcottThallinger changes to cluster command. commit | commitdiff | tree | snapshot
2009-07-30 pschlosspat's edits prior to v.1.5 commit | commitdiff | tree | snapshot
2009-07-28 westcottworking on chimeras commit | commitdiff | tree | snapshot
2009-07-26 westcottfixed bug with aligner in database class, worked on... commit | commitdiff | tree | snapshot
2009-07-22 westcottworked on chimeras commit | commitdiff | tree | snapshot
2009-07-22 westcottchanged sequence class so that when constructor is... commit | commitdiff | tree | snapshot
2009-07-20 westcottfixed bugs in venn and aligner commit | commitdiff | tree | snapshot
2009-07-14 westcott*** empty log message *** commit | commitdiff | tree | snapshot
2009-07-10 westcottadded sorted option to get.rabund command commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches