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mothur.git
2012-05-11 Sarah Westcottadded some debug stuff to chimera.uchime. optimized... commit | commitdiff | tree | snapshot
2012-05-11 Sarah Westcottfixed path redirect issue in shhh.flows. optimized... commit | commitdiff | tree | snapshot
2012-05-10 Sarah Westcottfixed typos commit | commitdiff | tree | snapshot
2012-05-10 Sarah Westcottadded abundance and sample parameters to get.coremicrob... commit | commitdiff | tree | snapshot
2012-05-09 Sarah Westcottworking on get.coremicrobiom commit | commitdiff | tree | snapshot
2012-05-09 John WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2012-05-09 John Westcottadded debug flag to mothurOut. added debug parameter... commit | commitdiff | tree | snapshot
2012-05-09 Sarah Westcottcluster.split split method defaults to classify if... commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottfixed segfault in unifrac with subsample. in progress... commit | commitdiff | tree | snapshot
2012-05-02 Sarah WestcottRevert to previous commit commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottfixing commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottmoving source to source folder commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottmoved mothur's source into a folder to make grabbing... commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottremoving chime source files from mother project. commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcottanother test commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcotttest2 commit | commitdiff | tree | snapshot
2012-05-02 Sarah Westcotttest commit commit | commitdiff | tree | snapshot
2012-05-01 John Westcottcommit test commit | commitdiff | tree | snapshot
2012-05-01 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-05-01 Sarah Westcottbug in dist.shared and tree.shared with new subsampling... commit | commitdiff | tree | snapshot
2012-05-01 Kathryn Iversonfixed sim9 and trial_swap commit | commitdiff | tree | snapshot
2012-05-01 Sarah Westcottchanges while testing commit | commitdiff | tree | snapshot
2012-05-01 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-05-01 Sarah Westcottfixed bug in rarefaction.single creating the groups... commit | commitdiff | tree | snapshot
2012-04-30 Kathryn Iversonfixed sim4 commit | commitdiff | tree | snapshot
2012-04-30 Kathryn Iversonadded else if (matrix == "sim2") { } commit | commitdiff | tree | snapshot
2012-04-30 Kathryn Iversonchanged sim2 to random_shuffle commit | commitdiff | tree | snapshot
2012-04-30 Kathryn Iversonadded a matrix "burn in" for sim9 so that the matrix... commit | commitdiff | tree | snapshot
2012-04-30 Kathryn Iversonfixed rowtotal and columntotal commit | commitdiff | tree | snapshot
2012-04-30 Kathryn Iversonremoved initmatrix and replaced it with co_matrix.... commit | commitdiff | tree | snapshot
2012-04-30 Sarah Westcottchanges while testing commit | commitdiff | tree | snapshot
2012-04-30 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-04-30 Sarah Westcottchanges while testing commit | commitdiff | tree | snapshot
2012-04-30 Kathryn Iversonre-wrote co-occurrence command commit | commitdiff | tree | snapshot
2012-04-27 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-04-27 Sarah Westcottchanges while testing. commit | commitdiff | tree | snapshot
2012-04-27 Kathryn Iversoncommented out the update_row_col_totals command. Should... commit | commitdiff | tree | snapshot
2012-04-23 Sarah Westcottbugs found while testing commit | commitdiff | tree | snapshot
2012-04-23 Sarah Westcottadded check for positive values in pairwise.seqs gap... commit | commitdiff | tree | snapshot
2012-04-20 Sarah Westcottadded uchime_src folder. added biom parameter to make... commit | commitdiff | tree | snapshot
2012-04-17 Sarah Westcottadded make.biom command commit | commitdiff | tree | snapshot
2012-04-16 Sarah Westcottadded subsample and consensus parameters to unifrac... commit | commitdiff | tree | snapshot
2012-04-13 Sarah Westcottfixing out labels to match those in shared file. If... commit | commitdiff | tree | snapshot
2012-04-13 Sarah Westcottadded tree reader class to handle reading trees. Rewor... commit | commitdiff | tree | snapshot
2012-04-11 Sarah Westcottfixed bug with windows version of trim.seqs when run... commit | commitdiff | tree | snapshot
2012-04-11 Sarah Westcottadded subsample and consensus parameters to unifrac... commit | commitdiff | tree | snapshot
2012-04-05 Sarah Westcottadding uchime source commit | commitdiff | tree | snapshot
2012-04-05 Sarah Westcottdeleted consensus command commit | commitdiff | tree | snapshot
2012-04-05 Sarah Westcottadded subsample, tiers and processors to tree.shared... commit | commitdiff | tree | snapshot
2012-04-03 Sarah Westcottfixed bug in corr.axes so that it now uses the shared... commit | commitdiff | tree | snapshot
2012-04-03 Sarah Westcottworking on adding subsampling to dist.shared. fixed... commit | commitdiff | tree | snapshot
2012-04-02 Sarah Westcottadded create.database command. fixed help in get.shared... commit | commitdiff | tree | snapshot
2012-03-28 Sarah Westcottmods to pcr.seqs commit | commitdiff | tree | snapshot
2012-03-28 Sarah Westcottadded keep dots to pcr.seqs. fixed pre.cluster name... commit | commitdiff | tree | snapshot
2012-03-28 Sarah Westcottminor changes to pcr.seqs. Added filterToPos and filte... commit | commitdiff | tree | snapshot
2012-03-27 Sarah Westcottinitialized numLinkers and numSpacers in trim.seqs... commit | commitdiff | tree | snapshot
2012-03-27 Sarah Westcottadded pcr.seqs command. fixed bug in rarefacftion.singl... commit | commitdiff | tree | snapshot
2012-03-13 Sarah Westcottfixed makefile commit | commitdiff | tree | snapshot
2012-03-13 Sarah Westcottbug fix in linear algebra that caused an infinite loop commit | commitdiff | tree | snapshot
2012-03-13 Sarah Westcottadded unix to ifdefs. minor changes while testing 1... commit | commitdiff | tree | snapshot
2012-03-07 Sarah Westcottfixed pvalues for otu.association and corr.axes, fixed... commit | commitdiff | tree | snapshot
2012-03-06 Sarah Westcottchanged sffinfo flow default to true. fixed bug in... commit | commitdiff | tree | snapshot
2012-03-05 Sarah Westcottfixed classify.seq error message when flip accnos file... commit | commitdiff | tree | snapshot
2012-03-02 Sarah Westcottadded cooccurence command commit | commitdiff | tree | snapshot
2012-02-29 Sarah Westcottparalellized metastats for windows commit | commitdiff | tree | snapshot
2012-02-28 Sarah Westcottparalellized dist.shared for windows commit | commitdiff | tree | snapshot
2012-02-28 Sarah Westcottfixed bug in windows summary.seqs and summary.qual... commit | commitdiff | tree | snapshot
2012-02-24 Sarah Westcottparalellized screen.seqs for windows. commit | commitdiff | tree | snapshot
2012-02-24 Sarah Westcottadded linker and spacer to trim.flows commit | commitdiff | tree | snapshot
2012-02-24 Sarah Westcottparalellized trim.seqs for windows. fixed bug in trim... commit | commitdiff | tree | snapshot
2012-02-22 Sarah Westcotttrim.seqs linker and spacer mods commit | commitdiff | tree | snapshot
2012-02-21 Sarah Westcottparalellized pairwise.seqs for windows commit | commitdiff | tree | snapshot
2012-02-21 Sarah Westcottparalellized filter.seqs for windows commit | commitdiff | tree | snapshot
2012-02-20 Sarah Westcottremoved unused copy constructors and comments within... commit | commitdiff | tree | snapshot
2012-02-06 Sarah Westcottadded flow file to sort.seqs. added setName and setScor... commit | commitdiff | tree | snapshot
2012-02-06 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-02-06 Sarah Westcottadded sort.seqs command. puts sequences from a fasta... commit | commitdiff | tree | snapshot
2012-02-03 Pat Schlossupped the optimization code for debugging from -O0... commit | commitdiff | tree | snapshot
2012-02-03 Sarah Westcotttesting public / private push error commit | commitdiff | tree | snapshot
2012-02-03 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-02-03 Sarah Westcotttesting public repo change commit | commitdiff | tree | snapshot
2012-02-03 John WestcottMerge remote-tracking branch 'origin/master' commit | commitdiff | tree | snapshot
2012-02-03 John Westcotttest of commit push pull commit | commitdiff | tree | snapshot
2012-02-03 Sarah Westcotttest on main machine commit | commitdiff | tree | snapshot
2012-02-03 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-02-03 Sarah WestcottRemoving .DS_Store commit | commitdiff | tree | snapshot
2012-02-01 Sarah Westcotttrying to push, still figuring out the new Xcode commit | commitdiff | tree | snapshot
2012-02-01 Sarah WestcottMerge remote-tracking branch 'mothur/master' commit | commitdiff | tree | snapshot
2012-02-01 Sarah Westcottadded significance scores to core.axes. added design... commit | commitdiff | tree | snapshot
2012-01-30 Pat Schlosspat testing git hub commit commit | commitdiff | tree | snapshot
2012-01-30 John Westcotttest on laptop setup commit | commitdiff | tree | snapshot
2012-01-30 Sarah Westcotttest ignore commit | commitdiff | tree | snapshot
2012-01-30 Sarah Westcotttest commit | commitdiff | tree | snapshot
2012-01-30 Sarah Westcotttest commit | commitdiff | tree | snapshot
2012-01-30 Sarah Westcotttest commit | commitdiff | tree | snapshot
2012-01-30 Sarah Westcottadded test comment commit | commitdiff | tree | snapshot
2012-01-27 westcottadded sequence name to error string in fastq.info.... commit | commitdiff | tree | snapshot
2012-01-25 westcottadded otu.association command. added calcSpearman,... commit | commitdiff | tree | snapshot
2012-01-19 westcottfixed bug with shhh.flow from file path name in write... commit | commitdiff | tree | snapshot
2012-01-09 westcott1.23.0 commit | commitdiff | tree | snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches