git.donarmstrong.com Git - mothur.git/shortlog

]> git.donarmstrong.com Git - mothur.git/shortlog

2012-05-11	Sarah Westcott	added some debug stuff to chimera.uchime. optimized...	commit \| commitdiff \| tree \| snapshot
2012-05-11	Sarah Westcott	fixed path redirect issue in shhh.flows. optimized...	commit \| commitdiff \| tree \| snapshot
2012-05-10	Sarah Westcott	fixed typos	commit \| commitdiff \| tree \| snapshot
2012-05-10	Sarah Westcott	added abundance and sample parameters to get.coremicrob...	commit \| commitdiff \| tree \| snapshot
2012-05-09	Sarah Westcott	working on get.coremicrobiom	commit \| commitdiff \| tree \| snapshot
2012-05-09	John Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-05-09	John Westcott	added debug flag to mothurOut. added debug parameter...	commit \| commitdiff \| tree \| snapshot
2012-05-09	Sarah Westcott	cluster.split split method defaults to classify if...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	fixed segfault in unifrac with subsample. in progress...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	Revert to previous commit	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	fixing	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	moving source to source folder	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	moved mothur's source into a folder to make grabbing...	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	removing chime source files from mother project.	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	another test	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	test2	commit \| commitdiff \| tree \| snapshot
2012-05-02	Sarah Westcott	test commit	commit \| commitdiff \| tree \| snapshot
2012-05-01	John Westcott	commit test	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	bug in dist.shared and tree.shared with new subsampling...	commit \| commitdiff \| tree \| snapshot
2012-05-01	Kathryn Iverson	fixed sim9 and trial_swap	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-05-01	Sarah Westcott	fixed bug in rarefaction.single creating the groups...	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	fixed sim4	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	added else if (matrix == "sim2") { }	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	changed sim2 to random_shuffle	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	added a matrix "burn in" for sim9 so that the matrix...	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	fixed rowtotal and columntotal	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	removed initmatrix and replaced it with co_matrix....	commit \| commitdiff \| tree \| snapshot
2012-04-30	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2012-04-30	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-04-30	Sarah Westcott	changes while testing	commit \| commitdiff \| tree \| snapshot
2012-04-30	Kathryn Iverson	re-wrote co-occurrence command	commit \| commitdiff \| tree \| snapshot
2012-04-27	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-04-27	Sarah Westcott	changes while testing.	commit \| commitdiff \| tree \| snapshot
2012-04-27	Kathryn Iverson	commented out the update_row_col_totals command. Should...	commit \| commitdiff \| tree \| snapshot
2012-04-23	Sarah Westcott	bugs found while testing	commit \| commitdiff \| tree \| snapshot
2012-04-23	Sarah Westcott	added check for positive values in pairwise.seqs gap...	commit \| commitdiff \| tree \| snapshot
2012-04-20	Sarah Westcott	added uchime_src folder. added biom parameter to make...	commit \| commitdiff \| tree \| snapshot
2012-04-17	Sarah Westcott	added make.biom command	commit \| commitdiff \| tree \| snapshot
2012-04-16	Sarah Westcott	added subsample and consensus parameters to unifrac...	commit \| commitdiff \| tree \| snapshot
2012-04-13	Sarah Westcott	fixing out labels to match those in shared file. If...	commit \| commitdiff \| tree \| snapshot
2012-04-13	Sarah Westcott	added tree reader class to handle reading trees. Rewor...	commit \| commitdiff \| tree \| snapshot
2012-04-11	Sarah Westcott	fixed bug with windows version of trim.seqs when run...	commit \| commitdiff \| tree \| snapshot
2012-04-11	Sarah Westcott	added subsample and consensus parameters to unifrac...	commit \| commitdiff \| tree \| snapshot
2012-04-05	Sarah Westcott	adding uchime source	commit \| commitdiff \| tree \| snapshot
2012-04-05	Sarah Westcott	deleted consensus command	commit \| commitdiff \| tree \| snapshot
2012-04-05	Sarah Westcott	added subsample, tiers and processors to tree.shared...	commit \| commitdiff \| tree \| snapshot
2012-04-03	Sarah Westcott	fixed bug in corr.axes so that it now uses the shared...	commit \| commitdiff \| tree \| snapshot
2012-04-03	Sarah Westcott	working on adding subsampling to dist.shared. fixed...	commit \| commitdiff \| tree \| snapshot
2012-04-02	Sarah Westcott	added create.database command. fixed help in get.shared...	commit \| commitdiff \| tree \| snapshot
2012-03-28	Sarah Westcott	mods to pcr.seqs	commit \| commitdiff \| tree \| snapshot
2012-03-28	Sarah Westcott	added keep dots to pcr.seqs. fixed pre.cluster name...	commit \| commitdiff \| tree \| snapshot
2012-03-28	Sarah Westcott	minor changes to pcr.seqs. Added filterToPos and filte...	commit \| commitdiff \| tree \| snapshot
2012-03-27	Sarah Westcott	initialized numLinkers and numSpacers in trim.seqs...	commit \| commitdiff \| tree \| snapshot
2012-03-27	Sarah Westcott	added pcr.seqs command. fixed bug in rarefacftion.singl...	commit \| commitdiff \| tree \| snapshot
2012-03-13	Sarah Westcott	fixed makefile	commit \| commitdiff \| tree \| snapshot
2012-03-13	Sarah Westcott	bug fix in linear algebra that caused an infinite loop	commit \| commitdiff \| tree \| snapshot
2012-03-13	Sarah Westcott	added unix to ifdefs. minor changes while testing 1...	commit \| commitdiff \| tree \| snapshot
2012-03-07	Sarah Westcott	fixed pvalues for otu.association and corr.axes, fixed...	commit \| commitdiff \| tree \| snapshot
2012-03-06	Sarah Westcott	changed sffinfo flow default to true. fixed bug in...	commit \| commitdiff \| tree \| snapshot
2012-03-05	Sarah Westcott	fixed classify.seq error message when flip accnos file...	commit \| commitdiff \| tree \| snapshot
2012-03-02	Sarah Westcott	added cooccurence command	commit \| commitdiff \| tree \| snapshot
2012-02-29	Sarah Westcott	paralellized metastats for windows	commit \| commitdiff \| tree \| snapshot
2012-02-28	Sarah Westcott	paralellized dist.shared for windows	commit \| commitdiff \| tree \| snapshot
2012-02-28	Sarah Westcott	fixed bug in windows summary.seqs and summary.qual...	commit \| commitdiff \| tree \| snapshot
2012-02-24	Sarah Westcott	paralellized screen.seqs for windows.	commit \| commitdiff \| tree \| snapshot
2012-02-24	Sarah Westcott	added linker and spacer to trim.flows	commit \| commitdiff \| tree \| snapshot
2012-02-24	Sarah Westcott	paralellized trim.seqs for windows. fixed bug in trim...	commit \| commitdiff \| tree \| snapshot
2012-02-22	Sarah Westcott	trim.seqs linker and spacer mods	commit \| commitdiff \| tree \| snapshot
2012-02-21	Sarah Westcott	paralellized pairwise.seqs for windows	commit \| commitdiff \| tree \| snapshot
2012-02-21	Sarah Westcott	paralellized filter.seqs for windows	commit \| commitdiff \| tree \| snapshot
2012-02-20	Sarah Westcott	removed unused copy constructors and comments within...	commit \| commitdiff \| tree \| snapshot
2012-02-06	Sarah Westcott	added flow file to sort.seqs. added setName and setScor...	commit \| commitdiff \| tree \| snapshot
2012-02-06	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-02-06	Sarah Westcott	added sort.seqs command. puts sequences from a fasta...	commit \| commitdiff \| tree \| snapshot
2012-02-03	Pat Schloss	upped the optimization code for debugging from -O0...	commit \| commitdiff \| tree \| snapshot
2012-02-03	Sarah Westcott	testing public / private push error	commit \| commitdiff \| tree \| snapshot
2012-02-03	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-02-03	Sarah Westcott	testing public repo change	commit \| commitdiff \| tree \| snapshot
2012-02-03	John Westcott	Merge remote-tracking branch 'origin/master'	commit \| commitdiff \| tree \| snapshot
2012-02-03	John Westcott	test of commit push pull	commit \| commitdiff \| tree \| snapshot
2012-02-03	Sarah Westcott	test on main machine	commit \| commitdiff \| tree \| snapshot
2012-02-03	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-02-03	Sarah Westcott	Removing .DS_Store	commit \| commitdiff \| tree \| snapshot
2012-02-01	Sarah Westcott	trying to push, still figuring out the new Xcode	commit \| commitdiff \| tree \| snapshot
2012-02-01	Sarah Westcott	Merge remote-tracking branch 'mothur/master'	commit \| commitdiff \| tree \| snapshot
2012-02-01	Sarah Westcott	added significance scores to core.axes. added design...	commit \| commitdiff \| tree \| snapshot
2012-01-30	Pat Schloss	pat testing git hub commit	commit \| commitdiff \| tree \| snapshot
2012-01-30	John Westcott	test on laptop setup	commit \| commitdiff \| tree \| snapshot
2012-01-30	Sarah Westcott	test ignore	commit \| commitdiff \| tree \| snapshot
2012-01-30	Sarah Westcott	test	commit \| commitdiff \| tree \| snapshot
2012-01-30	Sarah Westcott	test	commit \| commitdiff \| tree \| snapshot
2012-01-30	Sarah Westcott	test	commit \| commitdiff \| tree \| snapshot
2012-01-30	Sarah Westcott	added test comment	commit \| commitdiff \| tree \| snapshot
2012-01-27	westcott	added sequence name to error string in fastq.info....	commit \| commitdiff \| tree \| snapshot
2012-01-25	westcott	added otu.association command. added calcSpearman,...	commit \| commitdiff \| tree \| snapshot
2012-01-19	westcott	fixed bug with shhh.flow from file path name in write...	commit \| commitdiff \| tree \| snapshot
2012-01-09	westcott	1.23.0	commit \| commitdiff \| tree \| snapshot
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Mothur--16S microbiota sequencing software; mirror of main repository with my branches

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