From 3503ee51ce297cd232ee0a98ace045358a2dc10f Mon Sep 17 00:00:00 2001
From: kdiverson <kd.iverson@gmail.com>
Date: Wed, 11 Sep 2013 00:48:45 -0400
Subject: [PATCH] adding code for confusion matrix

---
 classifysharedcommand.cpp | 1 +
 1 file changed, 1 insertion(+)

diff --git a/classifysharedcommand.cpp b/classifysharedcommand.cpp
index 6191462..482a3eb 100755
--- a/classifysharedcommand.cpp
+++ b/classifysharedcommand.cpp
@@ -375,6 +375,7 @@ void ClassifySharedCommand::processSharedAndDesignData(vector<SharedRAbundVector
         
         randomForest.populateDecisionTrees();
         randomForest.calcForrestErrorRate();
+        //randomForest.printConfusionMatrix(intToTreatmentMap);
         
         map<string, string> variables; 
         variables["[filename]"] = outputDir + m->getRootName(m->getSimpleName(sharedfile)) + ".RF.";
-- 
2.39.2