From 0e5f3745f8f445db4cc77967c3baa0ed25362e97 Mon Sep 17 00:00:00 2001
From: Don Armstrong <don@donarmstrong.com>
Date: Tue, 26 May 2015 10:09:21 -0700
Subject: [PATCH] we want samtools 1.0, not samtools 0.1.8

---
 fpkm_from_srr | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/fpkm_from_srr b/fpkm_from_srr
index abcf486..27cad20 100755
--- a/fpkm_from_srr
+++ b/fpkm_from_srr
@@ -9,7 +9,7 @@ function actually_run_the_alignment {
     module load sratoolkit/2.3.5-2;
     module load bwa/0.7.10;
     module load cufflinks/2.2.1;
-    module load samtools/0.1.18
+    module load samtools/1.0;
     (cd $FROM_SRR_SRR;
      fastq-dump --gzip ${FROM_SRR_SRR}.sra;
      bwa mem -t ${CORES} $FROM_SRR_REF ${FROM_SRR_SRR}.fastq.gz | samtools view -b -o ${FROM_SRR_SRR}.bam;
-- 
2.39.2