From b5565a69ae2730b8c750b1619839f65c7ed42cbb Mon Sep 17 00:00:00 2001 From: Don Armstrong Date: Thu, 28 Dec 2017 16:33:16 -0800 Subject: [PATCH] tweak resume for monsanto --- dla-resume.org | 22 ++++++++++------------ 1 file changed, 10 insertions(+), 12 deletions(-) diff --git a/dla-resume.org b/dla-resume.org index 752fe5c..fc40f4e 100644 --- a/dla-resume.org +++ b/dla-resume.org @@ -39,24 +39,22 @@ + *BS* in Biology * Skills ** Genomics and Epigenomics -+ *NGS* and array-based Genomics and Epigenomics of complex human - diseases using *RNA-seq*, targeted DNA sequencing, *RRBS*, Illumina - bead arrays, and Affymetrix microarrays from sample collection to ++ *NGS* and array-based linkage and association-based mapping of + complex phenotypes using DNA sequencing, RNA-seq, Illumina bead + arrays, and Affymetrix microarrays from sample collection to publication. -+ Reproducible, scalable bioinformatics analysis using make, - *nextflow*, and *cwl* based workflows on cloud- and cluster-based - systems on terabyte-scale datasets ++ Reproducible, scalable bioinformatics analysis using R, perl, + python, make, *nextflow*, and *cwl* based workflows on cloud- and + cluster-based systems on terabyte-scale datasets + Alignment, annotation, and variant calling using existing and custom software, including *GATK*, *bwa*, *STAR*, and *kallisto*. -+ Correcting for and experimental design to overcome multiple - testing, confounders, and batch effects using Bayesian and - frequentist methods approaches -# + Using evolutionary genomics to identify causal human variants ++ Experimental design and correction to overcome multiple testing, + confounders, and batch effects using Bayesian and frequentist + methods ** Statistics + Statistical modeling (regression, inference, prediction, and learning in very large (> 1TB) datasets) + Addressing confounders and batch effects -# + Reproducible research ** Big Data + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure) + Inter-process communication: MPI, OpenMP @@ -66,7 +64,7 @@ + Mentored graduate students and Outreachy and Google Summer of Code interns + Former chair of Debian's Technical Committee -+ Head developer behind https://bugs.debian.org +# + Head developer behind https://bugs.debian.org ** Software Development + Languages: perl, R, C, C++, python, groovy, sh, make + Collaborative Development: git, travis, continuous integration, -- 2.39.5