From 74df5ff58049a3247d2b5779a9319c7bc2b27a28 Mon Sep 17 00:00:00 2001
From: Don Armstrong <don@donarmstrong.com>
Date: Mon, 16 Dec 2013 12:22:56 -0800
Subject: [PATCH] start adding debugging to trimoligos

---
 trimoligos.cpp | 1 +
 1 file changed, 1 insertion(+)

diff --git a/trimoligos.cpp b/trimoligos.cpp
index 0f2a9cb..b17542a 100644
--- a/trimoligos.cpp
+++ b/trimoligos.cpp
@@ -845,6 +845,7 @@ int TrimOligos::stripBarcode(Sequence& forwardSeq, Sequence& reverseSeq, Quality
 //*******************************************************************/
 int TrimOligos::stripPairedBarcode(Sequence& seq, QualityScores& qual, int& group){
     try {
+      m->debugOut("Stripping paired barcode");
         //look for forward barcode
         string rawSeq = seq.getUnaligned();
         int success = bdiffs + 1;	//guilty until proven innocent
-- 
2.39.2