From fdaa61df56405472b0a8aa2591353c9b9cd416d6 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Mon, 12 Dec 2011 11:35:04 +0000 Subject: [PATCH] add tests for read_embl git-svn-id: http://biopieces.googlecode.com/svn/trunk@1705 74ccb610-7750-0410-82ae-013aeee3265d --- bp_test/in/read_embl.in | 203 ++++++++++++++++++++++++++++++++ bp_test/in/read_embl.in.gz | Bin 0 -> 4573 bytes bp_test/out/read_embl.out.1 | 224 ++++++++++++++++++++++++++++++++++++ bp_test/out/read_embl.out.2 | 107 +++++++++++++++++ bp_test/out/read_embl.out.3 | 42 +++++++ bp_test/out/read_embl.out.4 | 30 +++++ bp_test/test/test_read_embl | 23 ++++ 7 files changed, 629 insertions(+) create mode 100644 bp_test/in/read_embl.in create mode 100644 bp_test/in/read_embl.in.gz create mode 100644 bp_test/out/read_embl.out.1 create mode 100644 bp_test/out/read_embl.out.2 create mode 100644 bp_test/out/read_embl.out.3 create mode 100644 bp_test/out/read_embl.out.4 create mode 100755 bp_test/test/test_read_embl diff --git a/bp_test/in/read_embl.in b/bp_test/in/read_embl.in new file mode 100644 index 0000000..dfcd2ca --- /dev/null +++ b/bp_test/in/read_embl.in @@ -0,0 +1,203 @@ +ID U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +XX +AC U49845; +XX +DT 07-MAY-1996 (Rel. 47, Created) +DT 25-MAR-2010 (Rel. 104, Last updated, Version 5) +XX +DE Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and +DE Rev7p (REV7) genes, complete cds. +XX +KW . +XX +OS Saccharomyces cerevisiae (baker's yeast) +OC Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; +OC Saccharomycetales; Saccharomycetaceae; Saccharomyces. +XX +RN [1] +RP 1-5028 +RX PUBMED; 8846915. +RA Roemer T., Madden K., Chang J., Snyder M.; +RT "Selection of axial growth sites in yeast requires Axl2p, a novel plasma +RT membrane glycoprotein"; +RL Genes Dev. 10(7):777-793(1996). +XX +RN [2] +RP 1-5028 +RA Roemer T.; +RT ; +RL Submitted (22-FEB-1996) to the INSDC. +RL Biology, Yale University, New Haven, CT 06520, USA +XX +DR Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. +DR Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. +DR Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. +DR Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. +DR Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. +DR Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. +DR EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. +DR EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. +DR EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +XX +FH Key Location/Qualifiers +FH +FT source 1..5028 +FT /organism="Saccharomyces cerevisiae" +FT /chromosome="IX" +FT /mol_type="genomic DNA" +FT /db_xref="taxon:4932" +FT mRNA <1..>206 +FT /product="TCP1-beta" +FT CDS <1..206 +FT /codon_start=3 +FT /product="TCP1-beta" +FT /db_xref="GOA:P39076" +FT /db_xref="InterPro:IPR002194" +FT /db_xref="InterPro:IPR002423" +FT /db_xref="InterPro:IPR012716" +FT /db_xref="InterPro:IPR017998" +FT /db_xref="PDB:3P9D" +FT /db_xref="UniProtKB/Swiss-Prot:P39076" +FT /protein_id="AAA98665.1" +FT /translation="SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAA +FT EVLLRVDNIIRARPRTANRQHM" +FT gene <687..>3158 +FT /gene="AXL2" +FT mRNA <687..>3158 +FT /gene="AXL2" +FT /product="Axl2p" +FT CDS 687..3158 +FT /codon_start=1 +FT /gene="AXL2" +FT /product="Axl2p" +FT /note="plasma membrane glycoprotein" +FT /db_xref="GOA:P38928" +FT /db_xref="InterPro:IPR006644" +FT /db_xref="InterPro:IPR008009" +FT /db_xref="InterPro:IPR013783" +FT /db_xref="InterPro:IPR014805" +FT /db_xref="InterPro:IPR015919" +FT /db_xref="SGD:S000001402" +FT /db_xref="UniProtKB/Swiss-Prot:P38928" +FT /protein_id="AAA98666.1" +FT /translation="MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFT +FT FQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVI +FT LEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFN +FT VTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYS +FT FVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDD +FT PISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFN +FT FEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKF +FT QSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSS +FT HHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGV +FT ILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSY +FT DDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKP +FT PVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKL +FT FDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQ +FT SGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQV +FT KDIHGRIPEML" +FT gene complement(<3300..>4037) +FT /gene="REV7" +FT mRNA complement(<3300..>4037) +FT /gene="REV7" +FT /product="Rev7p" +FT CDS complement(3300..4037) +FT /codon_start=1 +FT /gene="REV7" +FT /product="Rev7p" +FT /db_xref="GOA:P38927" +FT /db_xref="InterPro:IPR003511" +FT /db_xref="SGD:S000001401" +FT /db_xref="UniProtKB/Swiss-Prot:P38927" +FT /protein_id="AAA98667.1" +FT /translation="MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQF +FT VPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKD +FT DQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVD +FT SLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISG +FT DDKILNGVYSQYEEGESIFGSLF" +XX +SQ Sequence 5028 BP; 1510 A; 1074 C; 835 G; 1609 T; 0 other; + gatcctccat atacaacggt atctccacct caggtttaga tctcaacaac ggaaccattg 60 + ccgacatgag acagttaggt atcgtcgaga gttacaagct aaaacgagca gtagtcagct 120 + ctgcatctga agccgctgaa gttctactaa gggtggataa catcatccgt gcaagaccaa 180 + gaaccgccaa tagacaacat atgtaacata tttaggatat acctcgaaaa taataaaccg 240 + ccacactgtc attattataa ttagaaacag aacgcaaaaa ttatccacta tataattcaa 300 + agacgcgaaa aaaaaagaac aacgcgtcat agaacttttg gcaattcgcg tcacaaataa 360 + attttggcaa cttatgtttc ctcttcgagc agtactcgag ccctgtctca agaatgtaat 420 + aatacccatc gtaggtatgg ttaaagatag catctccaca acctcaaagc tccttgccga 480 + gagtcgccct cctttgtcga gtaattttca cttttcatat gagaacttat tttcttattc 540 + tttactctca catcctgtag tgattgacac tgcaacagcc accatcacta gaagaacaga 600 + acaattactt aatagaaaaa ttatatcttc ctcgaaacga tttcctgctt ccaacatcta 660 + cgtatatcaa gaagcattca cttaccatga cacagcttca gatttcatta ttgctgacag 720 + ctactatatc actactccat ctagtagtgg ccacgcccta tgaggcatat cctatcggaa 780 + aacaataccc cccagtggca agagtcaatg aatcgtttac atttcaaatt tccaatgata 840 + cctataaatc gtctgtagac aagacagctc aaataacata caattgcttc gacttaccga 900 + gctggctttc gtttgactct agttctagaa cgttctcagg tgaaccttct tctgacttac 960 + tatctgatgc gaacaccacg ttgtatttca atgtaatact cgagggtacg gactctgccg 1020 + acagcacgtc tttgaacaat acataccaat ttgttgttac aaaccgtcca tccatctcgc 1080 + tatcgtcaga tttcaatcta ttggcgttgt taaaaaacta tggttatact aacggcaaaa 1140 + acgctctgaa actagatcct aatgaagtct tcaacgtgac ttttgaccgt tcaatgttca 1200 + ctaacgaaga atccattgtg tcgtattacg gacgttctca gttgtataat gcgccgttac 1260 + ccaattggct gttcttcgat tctggcgagt tgaagtttac tgggacggca ccggtgataa 1320 + actcggcgat tgctccagaa acaagctaca gttttgtcat catcgctaca gacattgaag 1380 + gattttctgc cgttgaggta gaattcgaat tagtcatcgg ggctcaccag ttaactacct 1440 + ctattcaaaa tagtttgata atcaacgtta ctgacacagg taacgtttca tatgacttac 1500 + ctctaaacta tgtttatctc gatgacgatc ctatttcttc tgataaattg ggttctataa 1560 + acttattgga tgctccagac tgggtggcat tagataatgc taccatttcc gggtctgtcc 1620 + cagatgaatt actcggtaag aactccaatc ctgccaattt ttctgtgtcc atttatgata 1680 + cttatggtga tgtgatttat ttcaacttcg aagttgtctc cacaacggat ttgtttgcca 1740 + ttagttctct tcccaatatt aacgctacaa ggggtgaatg gttctcctac tattttttgc 1800 + cttctcagtt tacagactac gtgaatacaa acgtttcatt agagtttact aattcaagcc 1860 + aagaccatga ctgggtgaaa ttccaatcat ctaatttaac attagctgga gaagtgccca 1920 + agaatttcga caagctttca ttaggtttga aagcgaacca aggttcacaa tctcaagagc 1980 + tatattttaa catcattggc atggattcaa agataactca ctcaaaccac agtgcgaatg 2040 + caacgtccac aagaagttct caccactcca cctcaacaag ttcttacaca tcttctactt 2100 + acactgcaaa aatttcttct acctccgctg ctgctacttc ttctgctcca gcagcgctgc 2160 + cagcagccaa taaaacttca tctcacaata aaaaagcagt agcaattgcg tgcggtgttg 2220 + ctatcccatt aggcgttatc ctagtagctc tcatttgctt cctaatattc tggagacgca 2280 + gaagggaaaa tccagacgat gaaaacttac cgcatgctat tagtggacct gatttgaata 2340 + atcctgcaaa taaaccaaat caagaaaacg ctacaccttt gaacaacccc tttgatgatg 2400 + atgcttcctc gtacgatgat acttcaatag caagaagatt ggctgctttg aacactttga 2460 + aattggataa ccactctgcc actgaatctg atatttccag cgtggatgaa aagagagatt 2520 + ctctatcagg tatgaataca tacaatgatc agttccaatc ccaaagtaaa gaagaattat 2580 + tagcaaaacc cccagtacag cctccagaga gcccgttctt tgacccacag aataggtctt 2640 + cttctgtgta tatggatagt gaaccagcag taaataaatc ctggcgatat actggcaacc 2700 + tgtcaccagt ctctgatatt gtcagagaca gttacggatc acaaaaaact gttgatacag 2760 + aaaaactttt cgatttagaa gcaccagaga aggaaaaacg tacgtcaagg gatgtcacta 2820 + tgtcttcact ggacccttgg aacagcaata ttagcccttc tcccgtaaga aaatcagtaa 2880 + caccatcacc atataacgta acgaagcatc gtaaccgcca cttacaaaat attcaagact 2940 + ctcaaagcgg taaaaacgga atcactccca caacaatgtc aacttcatct tctgacgatt 3000 + ttgttccggt taaagatggt gaaaattttt gctgggtcca tagcatggaa ccagacagaa 3060 + gaccaagtaa gaaaaggtta gtagattttt caaataagag taatgtcaat gttggtcaag 3120 + ttaaggacat tcacggacgc atcccagaaa tgctgtgatt atacgcaacg atattttgct 3180 + taattttatt ttcctgtttt attttttatt agtggtttac agatacccta tattttattt 3240 + agtttttata cttagagaca tttaatttta attccattct tcaaatttca tttttgcact 3300 + taaaacaaag atccaaaaat gctctcgccc tcttcatatt gagaatacac tccattcaaa 3360 + attttgtcgt caccgctgat taatttttca ctaaactgat gaataatcaa aggccccacg 3420 + tcagaaccga ctaaagaagt gagttttatt ttaggaggtt gaaaaccatt attgtctggt 3480 + aaattttcat cttcttgaca tttaacccag tttgaatccc tttcaatttc tgctttttcc 3540 + tccaaactat cgaccctcct gtttctgtcc aacttatgtc ctagttccaa ttcgatcgca 3600 + ttaataactg cttcaaatgt tattgtgtca tcgttgactt taggtaattt ctccaaatgc 3660 + ataatcaaac tatttaagga agatcggaat tcgtcgaaca cttcagtttc cgtaatgatc 3720 + tgatcgtctt tatccacatg ttgtaattca ctaaaatcta aaacgtattt ttcaatgcat 3780 + aaatcgttct ttttattaat aatgcagatg gaaaatctgt aaacgtgcgt taatttagaa 3840 + agaacatcca gtataagttc ttctatatag tcaattaaag caggatgcct attaatggga 3900 + acgaactgcg gcaagttgaa tgactggtaa gtagtgtagt cgaatgactg aggtgggtat 3960 + acatttctat aaaataaaat caaattaatg tagcatttta agtataccct cagccacttc 4020 + tctacccatc tattcataaa gctgacgcaa cgattactat tttttttttc ttcttggatc 4080 + tcagtcgtcg caaaaacgta taccttcttt ttccgacctt ttttttagct ttctggaaaa 4140 + gtttatatta gttaaacagg gtctagtctt agtgtgaaag ctagtggttt cgattgactg 4200 + atattaagaa agtggaaatt aaattagtag tgtagacgta tatgcatatg tatttctcgc 4260 + ctgtttatgt ttctacgtac ttttgattta tagcaagggg aaaagaaata catactattt 4320 + tttggtaaag gtgaaagcat aatgtaaaag ctagaataaa atggacgaaa taaagagagg 4380 + cttagttcat cttttttcca aaaagcaccc aatgataata actaaaatga aaaggatttg 4440 + ccatctgtca gcaacatcag ttgtgtgagc aataataaaa tcatcacctc cgttgccttt 4500 + agcgcgtttg tcgtttgtat cttccgtaat tttagtctta tcaatgggaa tcataaattt 4560 + tccaatgaat tagcaatttc gtccaattct ttttgagctt cttcatattt gctttggaat 4620 + tcttcgcact tcttttccca ttcatctctt 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zCC0uWFbtheGRVttfGA6Vg1~N~XYhC6QW#mm*Q^pqlYZrFXxO-vK=QQ(>ANd}@vyHH zX(>VsEc&-sq3a4tde_b=P9_>D0{Oia*iH24v|!E%V#sE6ExboOF|Y{_Hf>vkeqEHu z-9#_AZ$M}O0!A3GP<%!{8>ZVZ-g=o)<&ciFkH4AdnNuSrF%tUL5z;$RN&&~cF`>Eg zX_#q5U^mgDXl2H-k~abluJXaG3h7zFoQZV13TN> z1w=x~56@F7T!6}*kodJl?8&(ADUu$>sbHB6iH(4Zof3T+HspF$kd9%k6?iy2x(>bs zk%Xy(j#w40xWL~-847c7LW_gI$-ynL02K%gipEGSv%(GnLwbV0gC2+L1R=^I@T9*b z#(l64cPny{0$dS5k$Y@RJmInijXosofxzh@!20&Oq6K6puUp7)M#hS^U7?F1vD?y{ zOb;prz$<(OE<_8Et1a)t5EeWuZC)-ULyffp=LcO6w_$M zSqad(jyX*Fi9TH1d$}jIGH!+2L+&Y38e+W*xPulDZu*13ZlZT4jJ~0f;I0%VyKvnn z?n0>Kzdm420TaMj9t3tl3HRtQ!^*w56XOtcVX&Z6O6DKLKK$xClNSe-0>E+MhQ`ap zC?SR};)XCsV!HLVWnTvZJNR;P;~=03F-EwMT&Jn7xl1Ya5ct&x|4-*HzdZS0l=WT) HY%c%+5PSL{ literal 0 HcmV?d00001 diff --git a/bp_test/out/read_embl.out.1 b/bp_test/out/read_embl.out.1 new file mode 100644 index 0000000..c515f4e --- /dev/null +++ b/bp_test/out/read_embl.out.1 @@ -0,0 +1,224 @@ +ORGANISM: Saccharomyces cerevisiae +CHROMOSOME: IX +MOL_TYPE: genomic DNA +DB_XREF: taxon:4932 +FEATURE: source +LOCATOR: 1..5028 +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgtaacatatttaggatatacctcgaaaataataaaccgccacactgtcattattataattagaaacagaacgcaaaaattatccactatataattcaaagacgcgaaaaaaaaagaacaacgcgtcatagaacttttggcaattcgcgtcacaaataaattttggcaacttatgtttcctcttcgagcagtactcgagccctgtctcaagaatgtaataatacccatcgtaggtatggttaaagatagcatctccacaacctcaaagctccttgccgagagtcgccctcctttgtcgagtaattttcacttttcatatgagaacttattttcttattctttactctcacatcctgtagtgattgacactgcaacagccaccatcactagaagaacagaacaattacttaatagaaaaattatatcttcctcgaaacgatttcctgcttccaacatctacgtatatcaagaagcattcacttaccatgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtgattatacgcaacgatattttgcttaattttattttcctgttttattttttattagtggtttacagataccctatattttatttagtttttatacttagagacatttaattttaattccattcttcaaatttcatttttgcacttaaaacaaagatccaaaaatgctctcgccctcttcatattgagaatacactccattcaaaattttgtcgtcaccgctgattaatttttcactaaactgatgaataatcaaaggccccacgtcagaaccgactaaagaagtgagttttattttaggaggttgaaaaccattattgtctggtaaattttcatcttcttgacatttaacccagtttgaatccctttcaatttctgctttttcctccaaactatcgaccctcctgtttctgtccaacttatgtcctagttccaattcgatcgcattaataactgcttcaaatgttattgtgtcatcgttgactttaggtaatttctccaaatgcataatcaaactatttaaggaagatcggaattcgtcgaacacttcagtttccgtaatgatctgatcgtctttatccacatgttgtaattcactaaaatctaaaacgtatttttcaatgcataaatcgttctttttattaataatgcagatggaaaatctgtaaacgtgcgttaatttagaaagaacatccagtataagttcttctatatagtcaattaaagcaggatgcctattaatgggaacgaactgcggcaagttgaatgactggtaagtagtgtagtcgaatgactgaggtgggtatacatttctataaaataaaatcaaattaatgtagcattttaagtataccctcagccacttctctacccatctattcataaagctgacgcaacgattactattttttttttcttcttggatctcagtcgtcgcaaaaacgtataccttctttttccgaccttttttttagctttctggaaaagtttatattagttaaacagggtctagtcttagtgtgaaagctagtggtttcgattgactgatattaagaaagtggaaattaaattagtagtgtagacgtatatgcatatgtatttctcgcctgtttatgtttctacgtacttttgatttatagcaaggggaaaagaaatacatactattttttggtaaaggtgaaagcataatgtaaaagctagaataaaatggacgaaataaagagaggcttagttcatcttttttccaaaaagcacccaatgataataactaaaatgaaaaggatttgccatctgtcagcaacatcagttgtgtgagcaataataaaatcatcacctccgttgcctttagcgcgtttgtcgtttgtatcttccgtaattttagtcttatcaatgggaatcataaattttccaatgaattagcaatttcgtccaattctttttgagcttcttcatatttgctttggaattcttcgcacttcttttcccattcatctctttcttcttccaaagcaacgatccttctacccatttgctcagagttcaaatcggcctctttcagtttatccattgcttccttcagtttggcttcactgtcttctagctgttgttctagatcctggtttttcttggtgtagttctcattattagatctcaagttattggagtcttcagccaattgctttgtatcagacaattgactctctaacttctccacttcactgtcgagttgctcgtttttagcggacaaagatttaatctcgttttctttttcagtgttagattgctctaattctttgagctgttctctcagctcctcatatttttcttgccatgactcagattctaattttaagctattcaatttctctttgat +SEQ_LEN: 5027 +STRAND: + +S_BEG: 0 +S_END: 5027 +--- +PRODUCT: TCP1-beta +FEATURE: mRNA +LOCATOR: <1..>206 +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgta +SEQ_LEN: 205 +STRAND: + +S_BEG: 0 +S_END: 205 +--- +PRODUCT: TCP1-beta +DB_XREF: GOA:P39076;InterPro:IPR002194;InterPro:IPR002423;InterPro:IPR012716;InterPro:IPR017998;PDB:3P9D;UniProtKB/Swiss-Prot:P39076 +PROTEIN_ID: AAA98665.1 +TRANSLATION: SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM +FEATURE: CDS +LOCATOR: <1..206 +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgta +SEQ_LEN: 205 +STRAND: + +S_BEG: 0 +S_END: 205 +--- +GENE: AXL2 +FEATURE: gene +LOCATOR: <687..>3158 +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +GENE: AXL2 +PRODUCT: Axl2p +FEATURE: mRNA +LOCATOR: <687..>3158 +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +GENE: AXL2 +PRODUCT: Axl2p +NOTE: plasma membrane glycoprotein +DB_XREF: GOA:P38928;InterPro:IPR006644;InterPro:IPR008009;InterPro:IPR013783;InterPro:IPR014805;InterPro:IPR015919;SGD:S000001402;UniProtKB/Swiss-Prot:P38928 +PROTEIN_ID: AAA98666.1 +TRANSLATION: MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFTFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQVKDIHGRIPEML +FEATURE: CDS +LOCATOR: 687..3158 +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +GENE: REV7 +FEATURE: gene +LOCATOR: complement(<3300..>4037) +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- +GENE: REV7 +PRODUCT: Rev7p +FEATURE: mRNA +LOCATOR: complement(<3300..>4037) +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- +GENE: REV7 +PRODUCT: Rev7p +DB_XREF: GOA:P38927;InterPro:IPR003511;SGD:S000001401;UniProtKB/Swiss-Prot:P38927 +PROTEIN_ID: AAA98667.1 +TRANSLATION: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +FEATURE: CDS +LOCATOR: complement(3300..4037) +ID: U49845; SV 1; linear; genomic DNA; STD; FUN; 5028 BP. +AC: U49845; +DT: 07-MAY-1996 (Rel. 47, Created) 25-MAR-2010 (Rel. 104, Last updated, Version 5) +DE: Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds. +KW: . +OS: Saccharomyces cerevisiae (baker's yeast) +OC: Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces. +RN: [1] [2] +RP: 1-5028 1-5028 +RX: PUBMED; 8846915. +RA: Roemer T., Madden K., Chang J., Snyder M.; Roemer T.; +RT: "Selection of axial growth sites in yeast requires Axl2p, a novel plasma membrane glycoprotein"; ; +RL: Genes Dev. 10(7):777-793(1996). Submitted (22-FEB-1996) to the INSDC. Biology, Yale University, New Haven, CT 06520, USA +DR: Ensembl-Gn; YIL139C; Saccharomyces_cerevisiae. Ensembl-Gn; YIL140W; Saccharomyces_cerevisiae. Ensembl-Gn; YIL142W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL139C; Saccharomyces_cerevisiae. Ensembl-Tr; YIL140W; Saccharomyces_cerevisiae. Ensembl-Tr; YIL142W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL139C; Saccharomyces_cerevisiae. EnsemblGenomes; YIL140W; Saccharomyces_cerevisiae. EnsemblGenomes; YIL142W; Saccharomyces_cerevisiae. +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- diff --git a/bp_test/out/read_embl.out.2 b/bp_test/out/read_embl.out.2 new file mode 100644 index 0000000..6047f33 --- /dev/null +++ b/bp_test/out/read_embl.out.2 @@ -0,0 +1,107 @@ +ORGANISM: Saccharomyces cerevisiae +CHROMOSOME: IX +MOL_TYPE: genomic DNA +DB_XREF: taxon:4932 +FEATURE: source +LOCATOR: 1..5028 +AC: U49845; +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgtaacatatttaggatatacctcgaaaataataaaccgccacactgtcattattataattagaaacagaacgcaaaaattatccactatataattcaaagacgcgaaaaaaaaagaacaacgcgtcatagaacttttggcaattcgcgtcacaaataaattttggcaacttatgtttcctcttcgagcagtactcgagccctgtctcaagaatgtaataatacccatcgtaggtatggttaaagatagcatctccacaacctcaaagctccttgccgagagtcgccctcctttgtcgagtaattttcacttttcatatgagaacttattttcttattctttactctcacatcctgtagtgattgacactgcaacagccaccatcactagaagaacagaacaattacttaatagaaaaattatatcttcctcgaaacgatttcctgcttccaacatctacgtatatcaagaagcattcacttaccatgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtgattatacgcaacgatattttgcttaattttattttcctgttttattttttattagtggtttacagataccctatattttatttagtttttatacttagagacatttaattttaattccattcttcaaatttcatttttgcacttaaaacaaagatccaaaaatgctctcgccctcttcatattgagaatacactccattcaaaattttgtcgtcaccgctgattaatttttcactaaactgatgaataatcaaaggccccacgtcagaaccgactaaagaagtgagttttattttaggaggttgaaaaccattattgtctggtaaattttcatcttcttgacatttaacccagtttgaatccctttcaatttctgctttttcctccaaactatcgaccctcctgtttctgtccaacttatgtcctagttccaattcgatcgcattaataactgcttcaaatgttattgtgtcatcgttgactttaggtaatttctccaaatgcataatcaaactatttaaggaagatcggaattcgtcgaacacttcagtttccgtaatgatctgatcgtctttatccacatgttgtaattcactaaaatctaaaacgtatttttcaatgcataaatcgttctttttattaataatgcagatggaaaatctgtaaacgtgcgttaatttagaaagaacatccagtataagttcttctatatagtcaattaaagcaggatgcctattaatgggaacgaactgcggcaagttgaatgactggtaagtagtgtagtcgaatgactgaggtgggtatacatttctataaaataaaatcaaattaatgtagcattttaagtataccctcagccacttctctacccatctattcataaagctgacgcaacgattactattttttttttcttcttggatctcagtcgtcgcaaaaacgtataccttctttttccgaccttttttttagctttctggaaaagtttatattagttaaacagggtctagtcttagtgtgaaagctagtggtttcgattgactgatattaagaaagtggaaattaaattagtagtgtagacgtatatgcatatgtatttctcgcctgtttatgtttctacgtacttttgatttatagcaaggggaaaagaaatacatactattttttggtaaaggtgaaagcataatgtaaaagctagaataaaatggacgaaataaagagaggcttagttcatcttttttccaaaaagcacccaatgataataactaaaatgaaaaggatttgccatctgtcagcaacatcagttgtgtgagcaataataaaatcatcacctccgttgcctttagcgcgtttgtcgtttgtatcttccgtaattttagtcttatcaatgggaatcataaattttccaatgaattagcaatttcgtccaattctttttgagcttcttcatatttgctttggaattcttcgcacttcttttcccattcatctctttcttcttccaaagcaacgatccttctacccatttgctcagagttcaaatcggcctctttcagtttatccattgcttccttcagtttggcttcactgtcttctagctgttgttctagatcctggtttttcttggtgtagttctcattattagatctcaagttattggagtcttcagccaattgctttgtatcagacaattgactctctaacttctccacttcactgtcgagttgctcgtttttagcggacaaagatttaatctcgttttctttttcagtgttagattgctctaattctttgagctgttctctcagctcctcatatttttcttgccatgactcagattctaattttaagctattcaatttctctttgat +SEQ_LEN: 5027 +STRAND: + +S_BEG: 0 +S_END: 5027 +--- +PRODUCT: TCP1-beta +FEATURE: mRNA +LOCATOR: <1..>206 +AC: U49845; +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgta +SEQ_LEN: 205 +STRAND: + +S_BEG: 0 +S_END: 205 +--- +PRODUCT: TCP1-beta +DB_XREF: GOA:P39076;InterPro:IPR002194;InterPro:IPR002423;InterPro:IPR012716;InterPro:IPR017998;PDB:3P9D;UniProtKB/Swiss-Prot:P39076 +PROTEIN_ID: AAA98665.1 +TRANSLATION: SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM +FEATURE: CDS +LOCATOR: <1..206 +AC: U49845; +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgta +SEQ_LEN: 205 +STRAND: + +S_BEG: 0 +S_END: 205 +--- +GENE: AXL2 +FEATURE: gene +LOCATOR: <687..>3158 +AC: U49845; +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +GENE: AXL2 +PRODUCT: Axl2p +FEATURE: mRNA +LOCATOR: <687..>3158 +AC: U49845; +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +GENE: AXL2 +PRODUCT: Axl2p +NOTE: plasma membrane glycoprotein +DB_XREF: GOA:P38928;InterPro:IPR006644;InterPro:IPR008009;InterPro:IPR013783;InterPro:IPR014805;InterPro:IPR015919;SGD:S000001402;UniProtKB/Swiss-Prot:P38928 +PROTEIN_ID: AAA98666.1 +TRANSLATION: MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFTFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQVKDIHGRIPEML +FEATURE: CDS +LOCATOR: 687..3158 +AC: U49845; +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +GENE: REV7 +FEATURE: gene +LOCATOR: complement(<3300..>4037) +AC: U49845; +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- +GENE: REV7 +PRODUCT: Rev7p +FEATURE: mRNA +LOCATOR: complement(<3300..>4037) +AC: U49845; +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- +GENE: REV7 +PRODUCT: Rev7p +DB_XREF: GOA:P38927;InterPro:IPR003511;SGD:S000001401;UniProtKB/Swiss-Prot:P38927 +PROTEIN_ID: AAA98667.1 +TRANSLATION: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +FEATURE: CDS +LOCATOR: complement(3300..4037) +AC: U49845; +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- diff --git a/bp_test/out/read_embl.out.3 b/bp_test/out/read_embl.out.3 new file mode 100644 index 0000000..d72cbbb --- /dev/null +++ b/bp_test/out/read_embl.out.3 @@ -0,0 +1,42 @@ +PRODUCT: TCP1-beta +DB_XREF: GOA:P39076;InterPro:IPR002194;InterPro:IPR002423;InterPro:IPR012716;InterPro:IPR017998;PDB:3P9D;UniProtKB/Swiss-Prot:P39076 +PROTEIN_ID: AAA98665.1 +TRANSLATION: SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM +FEATURE: CDS +LOCATOR: <1..206 +AC: U49845; +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgta +SEQ_LEN: 205 +STRAND: + +S_BEG: 0 +S_END: 205 +--- +GENE: AXL2 +PRODUCT: Axl2p +NOTE: plasma membrane glycoprotein +DB_XREF: GOA:P38928;InterPro:IPR006644;InterPro:IPR008009;InterPro:IPR013783;InterPro:IPR014805;InterPro:IPR015919;SGD:S000001402;UniProtKB/Swiss-Prot:P38928 +PROTEIN_ID: AAA98666.1 +TRANSLATION: MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFTFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQVKDIHGRIPEML +FEATURE: CDS +LOCATOR: 687..3158 +AC: U49845; +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +GENE: REV7 +PRODUCT: Rev7p +DB_XREF: GOA:P38927;InterPro:IPR003511;SGD:S000001401;UniProtKB/Swiss-Prot:P38927 +PROTEIN_ID: AAA98667.1 +TRANSLATION: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +FEATURE: CDS +LOCATOR: complement(3300..4037) +AC: U49845; +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- diff --git a/bp_test/out/read_embl.out.4 b/bp_test/out/read_embl.out.4 new file mode 100644 index 0000000..01ab57f --- /dev/null +++ b/bp_test/out/read_embl.out.4 @@ -0,0 +1,30 @@ +TRANSLATION: SSIYNGISTSGLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIRARPRTANRQHM +FEATURE: CDS +LOCATOR: <1..206 +AC: U49845; +SEQ: gatcctccatatacaacggtatctccacctcaggtttagatctcaacaacggaaccattgccgacatgagacagttaggtatcgtcgagagttacaagctaaaacgagcagtagtcagctctgcatctgaagccgctgaagttctactaagggtggataacatcatccgtgcaagaccaagaaccgccaatagacaacatatgta +SEQ_LEN: 205 +STRAND: + +S_BEG: 0 +S_END: 205 +--- +TRANSLATION: MTQLQISLLLTATISLLHLVVATPYEAYPIGKQYPPVARVNESFTFQISNDTYKSSVDKTAQITYNCFDLPSWLSFDSSSRTFSGEPSSDLLSDANTTLYFNVILEGTDSADSTSLNNTYQFVVTNRPSISLSSDFNLLALLKNYGYTNGKNALKLDPNEVFNVTFDRSMFTNEESIVSYYGRSQLYNAPLPNWLFFDSGELKFTGTAPVINSAIAPETSYSFVIIATDIEGFSAVEVEFELVIGAHQLTTSIQNSLIINVTDTGNVSYDLPLNYVYLDDDPISSDKLGSINLLDAPDWVALDNATISGSVPDELLGKNSNPANFSVSIYDTYGDVIYFNFEVVSTTDLFAISSLPNINATRGEWFSYYFLPSQFTDYVNTNVSLEFTNSSQDHDWVKFQSSNLTLAGEVPKNFDKLSLGLKANQGSQSQELYFNIIGMDSKITHSNHSANATSTRSSHHSTSTSSYTSSTYTAKISSTSAAATSSAPAALPAANKTSSHNKKAVAIACGVAIPLGVILVALICFLIFWRRRRENPDDENLPHAISGPDLNNPANKPNQENATPLNNPFDDDASSYDDTSIARRLAALNTLKLDNHSATESDISSVDEKRDSLSGMNTYNDQFQSQSKEELLAKPPVQPPESPFFDPQNRSSSVYMDSEPAVNKSWRYTGNLSPVSDIVRDSYGSQKTVDTEKLFDLEAPEKEKRTSRDVTMSSLDPWNSNISPSPVRKSVTPSPYNVTKHRNRHLQNIQDSQSGKNGITPTTMSTSSSDDFVPVKDGENFCWVHSMEPDRRPSKKRLVDFSNKSNVNVGQVKDIHGRIPEML +FEATURE: CDS +LOCATOR: 687..3158 +AC: U49845; +SEQ: atgacacagcttcagatttcattattgctgacagctactatatcactactccatctagtagtggccacgccctatgaggcatatcctatcggaaaacaataccccccagtggcaagagtcaatgaatcgtttacatttcaaatttccaatgatacctataaatcgtctgtagacaagacagctcaaataacatacaattgcttcgacttaccgagctggctttcgtttgactctagttctagaacgttctcaggtgaaccttcttctgacttactatctgatgcgaacaccacgttgtatttcaatgtaatactcgagggtacggactctgccgacagcacgtctttgaacaatacataccaatttgttgttacaaaccgtccatccatctcgctatcgtcagatttcaatctattggcgttgttaaaaaactatggttatactaacggcaaaaacgctctgaaactagatcctaatgaagtcttcaacgtgacttttgaccgttcaatgttcactaacgaagaatccattgtgtcgtattacggacgttctcagttgtataatgcgccgttacccaattggctgttcttcgattctggcgagttgaagtttactgggacggcaccggtgataaactcggcgattgctccagaaacaagctacagttttgtcatcatcgctacagacattgaaggattttctgccgttgaggtagaattcgaattagtcatcggggctcaccagttaactacctctattcaaaatagtttgataatcaacgttactgacacaggtaacgtttcatatgacttacctctaaactatgtttatctcgatgacgatcctatttcttctgataaattgggttctataaacttattggatgctccagactgggtggcattagataatgctaccatttccgggtctgtcccagatgaattactcggtaagaactccaatcctgccaatttttctgtgtccatttatgatacttatggtgatgtgatttatttcaacttcgaagttgtctccacaacggatttgtttgccattagttctcttcccaatattaacgctacaaggggtgaatggttctcctactattttttgccttctcagtttacagactacgtgaatacaaacgtttcattagagtttactaattcaagccaagaccatgactgggtgaaattccaatcatctaatttaacattagctggagaagtgcccaagaatttcgacaagctttcattaggtttgaaagcgaaccaaggttcacaatctcaagagctatattttaacatcattggcatggattcaaagataactcactcaaaccacagtgcgaatgcaacgtccacaagaagttctcaccactccacctcaacaagttcttacacatcttctacttacactgcaaaaatttcttctacctccgctgctgctacttcttctgctccagcagcgctgccagcagccaataaaacttcatctcacaataaaaaagcagtagcaattgcgtgcggtgttgctatcccattaggcgttatcctagtagctctcatttgcttcctaatattctggagacgcagaagggaaaatccagacgatgaaaacttaccgcatgctattagtggacctgatttgaataatcctgcaaataaaccaaatcaagaaaacgctacacctttgaacaacccctttgatgatgatgcttcctcgtacgatgatacttcaatagcaagaagattggctgctttgaacactttgaaattggataaccactctgccactgaatctgatatttccagcgtggatgaaaagagagattctctatcaggtatgaatacatacaatgatcagttccaatcccaaagtaaagaagaattattagcaaaacccccagtacagcctccagagagcccgttctttgacccacagaataggtcttcttctgtgtatatggatagtgaaccagcagtaaataaatcctggcgatatactggcaacctgtcaccagtctctgatattgtcagagacagttacggatcacaaaaaactgttgatacagaaaaacttttcgatttagaagcaccagagaaggaaaaacgtacgtcaagggatgtcactatgtcttcactggacccttggaacagcaatattagcccttctcccgtaagaaaatcagtaacaccatcaccatataacgtaacgaagcatcgtaaccgccacttacaaaatattcaagactctcaaagcggtaaaaacggaatcactcccacaacaatgtcaacttcatcttctgacgattttgttccggttaaagatggtgaaaatttttgctgggtccatagcatggaaccagacagaagaccaagtaagaaaaggttagtagatttttcaaataagagtaatgtcaatgttggtcaagttaaggacattcacggacgcatcccagaaatgctgtg +SEQ_LEN: 2471 +STRAND: + +S_BEG: 686 +S_END: 3157 +--- +TRANSLATION: MNRWVEKWLRVYLKCYINLILFYRNVYPPQSFDYTTYQSFNLPQFVPINRHPALIDYIEELILDVLSKLTHVYRFSICIINKKNDLCIEKYVLDFSELQHVDKDDQIITETEVFDEFRSSLNSLIMHLEKLPKVNDDTITFEAVINAIELELGHKLDRNRRVDSLEEKAEIERDSNWVKCQEDENLPDNNGFQPPKIKLTSLVGSDVGPLIIHQFSEKLISGDDKILNGVYSQYEEGESIFGSLF +FEATURE: CDS +LOCATOR: complement(3300..4037) +AC: U49845; +SEQ: tgaatagatgggtagagaagtggctgagggtatacttaaaatgctacattaatttgattttattttatagaaatgtatacccacctcagtcattcgactacactacttaccagtcattcaacttgccgcagttcgttcccattaataggcatcctgctttaattgactatatagaagaacttatactggatgttctttctaaattaacgcacgtttacagattttccatctgcattattaataaaaagaacgatttatgcattgaaaaatacgttttagattttagtgaattacaacatgtggataaagacgatcagatcattacggaaactgaagtgttcgacgaattccgatcttccttaaatagtttgattatgcatttggagaaattacctaaagtcaacgatgacacaataacatttgaagcagttattaatgcgatcgaattggaactaggacataagttggacagaaacaggagggtcgatagtttggaggaaaaagcagaaattgaaagggattcaaactgggttaaatgtcaagaagatgaaaatttaccagacaataatggttttcaacctcctaaaataaaactcacttctttagtcggttctgacgtggggcctttgattattcatcagtttagtgaaaaattaatcagcggtgacgacaaaattttgaatggagtgtattctcaatatgaagagggcgagagcatttttggatctttgttttaa +SEQ_LEN: 737 +STRAND: - +S_BEG: 3299 +S_END: 4036 +--- diff --git a/bp_test/test/test_read_embl b/bp_test/test/test_read_embl new file mode 100755 index 0000000..1ad3909 --- /dev/null +++ b/bp_test/test/test_read_embl @@ -0,0 +1,23 @@ +#!/bin/bash + +source "$BP_DIR/bp_test/lib/test.sh" + +run "$bp -i $in -O $tmp" +assert_no_diff $tmp $out.1 +clean + +run "$bp -i $in.gz -O $tmp" +assert_no_diff $tmp $out.1 +clean + +run "$bp -i $in -k AC -O $tmp" +assert_no_diff $tmp $out.2 +clean + +run "$bp -i $in -k AC -f CDS -O $tmp" +assert_no_diff $tmp $out.3 +clean + +run "$bp -i $in -k AC -f CDS -q translation -O $tmp" +assert_no_diff $tmp $out.4 +clean -- 2.39.5