From fa79a9159ca2dc2e9ce834d0f018ca92a6209f29 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Fri, 6 Mar 2009 15:40:01 +0000
Subject: [PATCH] got rid of rd_parsimony ext.

---
 fullmatrix.cpp       | 6 +++++-
 parsimonycommand.cpp | 4 ++--
 2 files changed, 7 insertions(+), 3 deletions(-)

diff --git a/fullmatrix.cpp b/fullmatrix.cpp
index 6ff9334..3f1344c 100644
--- a/fullmatrix.cpp
+++ b/fullmatrix.cpp
@@ -14,7 +14,11 @@
 //This constructor reads a distance matrix file and stores the data in the matrix.
 FullMatrix::FullMatrix(ifstream& f) {
 	try{
-		f >> numSeqs;
+		string name;
+		f >> numSeqs >> name;
+		
+		matrix.resize(numSeqs);  
+		
 		
 	
 	}
diff --git a/parsimonycommand.cpp b/parsimonycommand.cpp
index 633ddad..4b3435e 100644
--- a/parsimonycommand.cpp
+++ b/parsimonycommand.cpp
@@ -28,8 +28,8 @@ ParsimonyCommand::ParsimonyCommand() {
 		}else { //user wants random distribution
 			savetmap = globaldata->gTreemap;
 			getUserInput();
-			parsFile = randomtree + ".rd_parsimony";
-			parsFileout = globaldata->getTreeFile() + "temp" + ".rd_parsimony";
+			parsFile = randomtree;
+			parsFileout = globaldata->getTreeFile() + "temp";
 		}
 		
 		//set users groups to analyze
-- 
2.39.5