From e965e24b1d99c55c250ea97d63d29f358d3568bf Mon Sep 17 00:00:00 2001
From: Don Armstrong <don@donarmstrong.com>
Date: Wed, 3 Jan 2018 12:53:43 -0800
Subject: [PATCH] add in skills from systems administration

---
 dla-resume.org | 60 +++++++++++++++++++++++---------------------------
 1 file changed, 28 insertions(+), 32 deletions(-)

diff --git a/dla-resume.org b/dla-resume.org
index fc40f4e..e5f78d7 100644
--- a/dla-resume.org
+++ b/dla-resume.org
@@ -38,51 +38,47 @@
 + *PhD* in Cell, Molecular and Developmental Biology
 + *BS* in Biology
 * Skills
-** Genomics and Epigenomics
-+ *NGS* and array-based linkage and association-based mapping of
-  complex phenotypes using DNA sequencing, RNA-seq, Illumina bead
-  arrays, and Affymetrix microarrays from sample collection to
-  publication.
-+ Reproducible, scalable bioinformatics analysis using R, perl,
-  python, make, *nextflow*, and *cwl* based workflows on cloud- and
-  cluster-based systems on terabyte-scale datasets
-+ Alignment, annotation, and variant calling using existing and custom
-  software, including *GATK*, *bwa*, *STAR*, and *kallisto*.
-+ Experimental design and correction to overcome multiple testing,
-  confounders, and batch effects using Bayesian and frequentist
-  methods
-** Statistics
-+ Statistical modeling (regression, inference, prediction, and
-  learning in very large (> 1TB) datasets)
-+ Addressing confounders and batch effects
+** Programming Languages
+   + [[http://r-project.org][R]], [[http://www.perl.org][Perl]], sh (bash, POSIX, and zsh), SQL, C/C++, HTML, CSS,
+     javascript
+** Applications and Daemons
+   + Web Infrastructure: apache, ngix, varnish
+   + SQL servers: PostgreSQL, MySQL (including failover and replication)
+   + VCS: git, svn, bzr
+   + Mail Infrastructure: postfix, exim, sendmail, mailman, spamassassin
+   + Configuration Infrastructure: puppet
+   + Documentation: \LaTeX, emacs, MarkDown, wikicode, ikiwiki, trac
+   + Monitoring: munin, nagios
+   + Issue Tracking: Debbugs, Request Tracker, Trac
+   + HPC: torque, OpenMPI, slurm
++ Collaborative Development: git, travis, continuous integration,
+  automated testing
++ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
+  Powerpoint
+** Networking
+   + Hardware, Linux routing and firewall experience, ferm, DHCP,
+     openvpn, bonding, and NAT.
+** Operating systems
+   + GNU/Linux (Debian, Ubuntu, Red Hat)
+   + Windows
+# ** Statistics
+# + Statistical modeling (regression, inference, prediction, and
+#   learning in very large (> 1TB) datasets)
+# + Addressing confounders and batch effects
 ** Big Data
 + Parallel and Cloud Computing (slurm, torque, AWS, OpenStack, Azure)
 + Inter-process communication: MPI, OpenMP
 + Filestorage: Gluster, CEFS, GPFS, Lustre
-+ Linux system administration
 ** Mentoring and Leadership
 + Mentored graduate students and Outreachy and Google Summer of Code
   interns
 + Former chair of Debian's Technical Committee
-# + Head developer behind https://bugs.debian.org
-** Software Development
-+ Languages: perl, R, C, C++, python, groovy, sh, make
-+ Collaborative Development: git, travis, continuous integration,
-  automated testing
-+ Web, Mobile: Shiny, jQuery, JavaScript
-+ Databases: Postgresql (PL/SQL), SQLite, Mysql, NoSQL
-+ Office Software: Gnumeric, Libreoffice, \LaTeX, Word, Excel,
-  Powerpoint
++ Head developer behind https://bugs.debian.org
 ** Communication
 + Strong written communication skills as evidenced by publication
   record
 + Strong verbal and presentation skills as evidenced by presentation
   and teaching record
-# ** Consortia Involvement
-# + *H3A Bionet*: Generating workflows and cloud resources for H3 Africa
-# + *Psychiatric Genomics Consortium*: Identification of epigenetic
-#   variants which are correlated with PTSD.
-# + *SLEGEN*: System lupus erythematosus genetics consortium.
 
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