From e88d4bf536d542ca18082e6c6b4d3302994b56b8 Mon Sep 17 00:00:00 2001 From: Yaroslav Halchenko Date: Wed, 29 Feb 2012 11:24:43 -0500 Subject: [PATCH] added Ginkgo CADx to lin4neuro descr + more links to software projects --- sphinx/derivatives.rst | 20 ++++++++++---------- sphinx/link_names.txt | 8 ++++++++ 2 files changed, 18 insertions(+), 10 deletions(-) diff --git a/sphinx/derivatives.rst b/sphinx/derivatives.rst index 97016ab..b80cbaf 100644 --- a/sphinx/derivatives.rst +++ b/sphinx/derivatives.rst @@ -41,12 +41,12 @@ USB Stick for Computational Neuroscience by Cengiz Günay |**Purpose** | Computational neuroscience tools for course-work | +---------------------------+-------------------------------------------------------+ |**Features** | - Persistent Storage | -| | - Based on Ubuntu 11.04 | +| | - Based on Ubuntu_ 11.04 | +---------------------------+-------------------------------------------------------+ |**Pre-installed Software** | NeuroDebian | -| | TBA | +| | TBA | | | Custom: | -| | Genesis 2.3, Neuron 7.2, XPPAUT 6.10 | +| | Genesis_ 2.3, Neuron_ 7.2, XPPAUT_ 6.10 | +---------------------------+-------------------------------------------------------+ |**Download** | TBA | +---------------------------+-------------------------------------------------------+ @@ -64,14 +64,14 @@ Lin4Neuro +---------------------------+-------------------------------------------------------+ |**Purpose** | Neuroimaging tools for course-work | +---------------------------+-------------------------------------------------------+ -|**Features** | - Datasets and tutorials from C.Rorden (MRIcron) | +|**Features** | - Datasets and tutorials from C.Rorden (mricron_) | | | - Both 32- and 64-bit images | -| | - Based on Ubuntu 10.04 LTS | +| | - Based on Ubuntu_ 10.04 LTS | +---------------------------+-------------------------------------------------------+ |**Pre-installed Software** | NeuroDebian | -| | AFNI, AMIDE, Caret, FSL, LIPSIA, MRIcron, etc. | +| | AFNI_, AMIDE, Caret_, FSL_, LIPSIA_, mricron_, etc. | | | Custom: | -| | 3DSlicer, MINC, MRIConvert, Virtual MRI | +| | 3DSlicer, Ginkgo CADx, MINC, MRIConvert, Virtual MRI | +---------------------------+-------------------------------------------------------+ |**Download** | ftp://ftp.nemotos.net/ [~2GB] | +---------------------------+-------------------------------------------------------+ @@ -90,14 +90,14 @@ XNAT +---------------------------+-------------------------------------------------------+ |**Homepage** | http://datasharing.incf.org/ni/Install_XNAT | +---------------------------+-------------------------------------------------------+ -|**Purpose** | XNAT deployment | +|**Purpose** | XNAT_ deployment | +---------------------------+-------------------------------------------------------+ -|**Features** | - XNAT 1.5 | +|**Features** | - XNAT_ 1.5 | | | - 64-bit only | | | - Based on NeuroDebian VM appliance | +---------------------------+-------------------------------------------------------+ |**Pre-installed Software** | Custom: | -| | XNAT | +| | XNAT_ | +---------------------------+-------------------------------------------------------+ |**Download** | `XNAT 1.5.0 NeuroDebian VM `_ | +---------------------------+-------------------------------------------------------+ diff --git a/sphinx/link_names.txt b/sphinx/link_names.txt index 3071b03..c4d7224 100644 --- a/sphinx/link_names.txt +++ b/sphinx/link_names.txt @@ -16,6 +16,10 @@ .. _nibabel: http://nipy.sourceforge.net/nibabel .. _dipy: http://nipy.sourceforge.net/dipy +.. _Neuron: http://www.neuron.yale.edu/neuron +.. _XPPAUT: http://www.math.pitt.edu/~bard/xpp/xpp.html +.. _Genesis: http://www.genesis-sim.org + .. Documentation tools .. _graphviz: http://www.graphviz.org/ .. _Sphinx: http://sphinx.pocoo.org/ @@ -83,16 +87,19 @@ .. _pydicom: http://code.google.com/p/pydicom/ .. Not so python imaging projects +.. _Caret: http://brainvis.wustl.edu/wiki/index.php/Caret:About .. _matlab: http://www.mathworks.com .. _spm: http://www.fil.ion.ucl.ac.uk/spm .. _spm8: http://www.fil.ion.ucl.ac.uk/spm/software/spm8 .. _eeglab: http://sccn.ucsd.edu/eeglab .. _AFNI: http://afni.nimh.nih.gov/afni .. _FSL: http://www.fmrib.ox.ac.uk/fsl +.. _LIPSIA: http://www.cbs.mpg.de/institute/software/lipsia .. _FreeSurfer: http://surfer.nmr.mgh.harvard.edu .. _voxbo: http://www.voxbo.org .. _mricron: http://www.cabiatl.com/mricro/mricron .. _slicer: http://www.slicer.org/ +.. _XNAT: http://xnat.org .. File formats .. _DICOM: http://medical.nema.org/ @@ -116,6 +123,7 @@ .. _swig: http://www.swig.org .. _NeuroDebian: http://neuro.debian.net .. _Debian: http://www.debian.org +.. _Ubuntu: http://www.ubuntu.com .. _exppsy: http://alioth.debian.org/projects/pkg-exppsy .. _`Debian Med`: http://debian-med.alioth.debian.org .. _`Debian Science`: http://wiki.debian.org/DebianScience -- 2.39.5