From e73e95146e342e952ff96efbd67677bec2120e83 Mon Sep 17 00:00:00 2001
From: westcott <westcott>
Date: Tue, 3 May 2011 13:20:50 +0000
Subject: [PATCH] changed defaults in slayer to minsnp=10 and realign=t

---
 chimeraslayercommand.cpp | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 1119332..9299f89 100644
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -336,7 +336,7 @@ ChimeraSlayerCommand::ChimeraSlayerCommand(string option)  {
 			temp = validParameter.validFile(parameters, "minbs", false);			if (temp == "not found") { temp = "90"; }
 			convert(temp, minBS);
 			
-			temp = validParameter.validFile(parameters, "minsnp", false);			if (temp == "not found") { temp = "100"; }
+			temp = validParameter.validFile(parameters, "minsnp", false);			if (temp == "not found") { temp = "10"; }
 			convert(temp, minSNP);
 
 			temp = validParameter.validFile(parameters, "parents", false);			if (temp == "not found") { temp = "3"; }
-- 
2.39.5