From e1cdc4f27e70a843c15744e261ae3fc1f1787fb3 Mon Sep 17 00:00:00 2001 From: martinahansen Date: Wed, 1 Sep 2010 13:48:50 +0000 Subject: [PATCH] added tests for mask_seq git-svn-id: http://biopieces.googlecode.com/svn/trunk@1073 74ccb610-7750-0410-82ae-013aeee3265d --- bp_test/in/mask_seq.in | 3 +++ bp_test/out/mask_seq.out.1 | 3 +++ bp_test/out/mask_seq.out.2 | 3 +++ bp_test/out/mask_seq.out.3 | 3 +++ bp_test/test/test_mask_seq | 15 +++++++++++++++ 5 files changed, 27 insertions(+) create mode 100644 bp_test/in/mask_seq.in create mode 100644 bp_test/out/mask_seq.out.1 create mode 100644 bp_test/out/mask_seq.out.2 create mode 100644 bp_test/out/mask_seq.out.3 create mode 100755 bp_test/test/test_mask_seq diff --git a/bp_test/in/mask_seq.in b/bp_test/in/mask_seq.in new file mode 100644 index 0000000..aed3c6a --- /dev/null +++ b/bp_test/in/mask_seq.in @@ -0,0 +1,3 @@ +SEQ: AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA +SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~ +--- diff --git a/bp_test/out/mask_seq.out.1 b/bp_test/out/mask_seq.out.1 new file mode 100644 index 0000000..f8c5a3b --- /dev/null +++ b/bp_test/out/mask_seq.out.1 @@ -0,0 +1,3 @@ +SEQ: aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA +SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~ +--- diff --git a/bp_test/out/mask_seq.out.2 b/bp_test/out/mask_seq.out.2 new file mode 100644 index 0000000..3ae8803 --- /dev/null +++ b/bp_test/out/mask_seq.out.2 @@ -0,0 +1,3 @@ +SEQ: aaaaaaaaaaaaaaaaaaaaaaaaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA +SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~ +--- diff --git a/bp_test/out/mask_seq.out.3 b/bp_test/out/mask_seq.out.3 new file mode 100644 index 0000000..6539730 --- /dev/null +++ b/bp_test/out/mask_seq.out.3 @@ -0,0 +1,3 @@ +SEQ: aaaaaAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA +SCORES: !"#$%&'()*+,-./0123456789:;<=>?@ABCDEFGHIJKLMNOPQRSTUVWXYZ[\]^_`abcdefghijklmnopqrstuvwxyz{|}~ +--- diff --git a/bp_test/test/test_mask_seq b/bp_test/test/test_mask_seq new file mode 100755 index 0000000..182584a --- /dev/null +++ b/bp_test/test/test_mask_seq @@ -0,0 +1,15 @@ +#!/bin/bash + +source "$BP_DIR/bp_test/lib/test.sh" + +run "$bp -I $in -c 0 -O $tmp" +assert_no_diff $tmp $out.1 +clean + +run "$bp -I $in -c 0 -b 59 -O $tmp" +assert_no_diff $tmp $out.2 +clean + +run "$bp -I $in -c 5 -b 33 -O $tmp" +assert_no_diff $tmp $out.3 +clean -- 2.39.5