From de3817f963a3ed45cc084414b2af078962010b61 Mon Sep 17 00:00:00 2001
From: mikaels <mikaels@9efb377e-2e27-44b9-b91a-ec4abb80ed8b>
Date: Fri, 10 Apr 2009 17:59:00 +0000
Subject: [PATCH] Defined some of the non-standard data types for compatibility
 with Visual Studio.

git-svn-id: svn+ssh://gene.bc.edu/home/subversion/Derek/BamTools/trunk@5 9efb377e-2e27-44b9-b91a-ec4abb80ed8b
---
 BamAlignment.h | 11 +++++++++++
 BamReader.h    | 14 +++++++++++++-
 2 files changed, 24 insertions(+), 1 deletion(-)

diff --git a/BamAlignment.h b/BamAlignment.h
index b299ab3..e876f9b 100644
--- a/BamAlignment.h
+++ b/BamAlignment.h
@@ -7,7 +7,18 @@
 #ifndef BAMALIGNMENT_H
 #define BAMALIGNMENT_H
 
+#ifdef WIN32
+typedef char                 int8_t;
+typedef unsigned char       uint8_t;
+typedef short               int16_t;
+typedef unsigned short     uint16_t;
+typedef int                 int32_t;
+typedef unsigned int       uint32_t;
+typedef long long           int64_t;
+typedef unsigned long long uint64_t;
+#else
 #include <stdint.h>
+#endif
 
 // C++ includes
 #include <string>
diff --git a/BamReader.h b/BamReader.h
index 786f4c2..7748afa 100644
--- a/BamReader.h
+++ b/BamReader.h
@@ -44,11 +44,23 @@
 
 // C library includes
 #include <assert.h>
-#include <stdint.h>
 #include <stdio.h>
 #include <stdlib.h>
 #include <string.h>
 
+#ifdef WIN32
+typedef char                 int8_t;
+typedef unsigned char       uint8_t;
+typedef short               int16_t;
+typedef unsigned short     uint16_t;
+typedef int                 int32_t;
+typedef unsigned int       uint32_t;
+typedef long long           int64_t;
+typedef unsigned long long uint64_t;
+#else
+#include <stdint.h>
+#endif
+
 // BGZF library includes/defines
 #include "bgzf.h"
 typedef BGZF* BamFile;
-- 
2.39.5